miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 99150 0.7 0.575463
Target:  5'- -aCCUCaCGCCGGCGCC--CGAGGcuGg -3'
miRNA:   3'- uaGGAG-GCGGCCGUGGcuGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 97940 0.69 0.643121
Target:  5'- uUCCUCCGgCGGCAgCG-CGucGAAGu -3'
miRNA:   3'- uAGGAGGCgGCCGUgGCuGCucCUUC- -5'
15746 3' -60.2 NC_004065.1 + 97921 0.67 0.774678
Target:  5'- -aCCUCgaaccgccgcgCGuCCGGCACCGGCGuGGcAGc -3'
miRNA:   3'- uaGGAG-----------GC-GGCCGUGGCUGCuCCuUC- -5'
15746 3' -60.2 NC_004065.1 + 90111 0.68 0.738443
Target:  5'- uUCaacCCGCUGGCGCCGcCGGccGGAGGc -3'
miRNA:   3'- uAGga-GGCGGCCGUGGCuGCU--CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 86151 0.68 0.710367
Target:  5'- uUCUUCaCGCCGGCGCCGuucuUGGcGGAu- -3'
miRNA:   3'- uAGGAG-GCGGCCGUGGCu---GCU-CCUuc -5'
15746 3' -60.2 NC_004065.1 + 82784 0.68 0.691338
Target:  5'- -gCgUCCGgUGGCGCCGACccauccggggguGGGGAAGu -3'
miRNA:   3'- uaGgAGGCgGCCGUGGCUG------------CUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 82545 0.7 0.598564
Target:  5'- uUCC-CCGCCGGCACCacauggugcuuccaGCGGGGcGAGa -3'
miRNA:   3'- uAGGaGGCGGCCGUGGc-------------UGCUCC-UUC- -5'
15746 3' -60.2 NC_004065.1 + 79763 0.73 0.455667
Target:  5'- gAUCCUCUGg-GGCACC-ACGAGGGAGa -3'
miRNA:   3'- -UAGGAGGCggCCGUGGcUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 77719 0.74 0.396126
Target:  5'- cGUCC-CCGCCGGCACCGcCGccgccgcAGGAc- -3'
miRNA:   3'- -UAGGaGGCGGCCGUGGCuGC-------UCCUuc -5'
15746 3' -60.2 NC_004065.1 + 76370 0.71 0.556368
Target:  5'- cUCCaUCgCGCCGGCGCCGcCGcGGAu- -3'
miRNA:   3'- uAGG-AG-GCGGCCGUGGCuGCuCCUuc -5'
15746 3' -60.2 NC_004065.1 + 73112 0.71 0.51878
Target:  5'- uUCCU-CGUCGGUGCCGGCgGAGGAu- -3'
miRNA:   3'- uAGGAgGCGGCCGUGGCUG-CUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 67680 0.68 0.738443
Target:  5'- uUCCcggUCCGaUCGGC-UCGAUGAGGggGu -3'
miRNA:   3'- uAGG---AGGC-GGCCGuGGCUGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 66775 0.66 0.817344
Target:  5'- -gCCggcgCCGCCGcuGCGCCGACGAaacaugagcGGAc- -3'
miRNA:   3'- uaGGa---GGCGGC--CGUGGCUGCU---------CCUuc -5'
15746 3' -60.2 NC_004065.1 + 63882 0.71 0.556368
Target:  5'- -gCCgcugCCGCCGGCGCCGACGu----- -3'
miRNA:   3'- uaGGa---GGCGGCCGUGGCUGCuccuuc -5'
15746 3' -60.2 NC_004065.1 + 63076 0.66 0.825453
Target:  5'- ----gUCGCCGGuCGCCGGCGAGcGAc- -3'
miRNA:   3'- uaggaGGCGGCC-GUGGCUGCUC-CUuc -5'
15746 3' -60.2 NC_004065.1 + 55442 0.66 0.841191
Target:  5'- gGUCUUCgaGUCGGCGCUG--GGGGAAGg -3'
miRNA:   3'- -UAGGAGg-CGGCCGUGGCugCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 55384 0.7 0.61404
Target:  5'- aGUCCUCCGgcacCCGcGCaACCGACG-GGAGu -3'
miRNA:   3'- -UAGGAGGC----GGC-CG-UGGCUGCuCCUUc -5'
15746 3' -60.2 NC_004065.1 + 42082 0.66 0.831036
Target:  5'- -aCCUCgcugaugugcgcguCGCCGGCGCCGACGuacGuGAc- -3'
miRNA:   3'- uaGGAG--------------GCGGCCGUGGCUGCu--C-CUuc -5'
15746 3' -60.2 NC_004065.1 + 34922 0.66 0.825453
Target:  5'- ----aCCGCCGGCAgCUGACGccccuGGggGu -3'
miRNA:   3'- uaggaGGCGGCCGU-GGCUGCu----CCuuC- -5'
15746 3' -60.2 NC_004065.1 + 34369 0.67 0.78347
Target:  5'- -cCCUCCGCCgcucGGCuGCCGG-GAGGcGAGg -3'
miRNA:   3'- uaGGAGGCGG----CCG-UGGCUgCUCC-UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.