Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15746 | 3' | -60.2 | NC_004065.1 | + | 151208 | 0.72 | 0.509536 |
Target: 5'- -gCCUCCugaucaCCGGUACCGccggcGCGGGGAAGa -3' miRNA: 3'- uaGGAGGc-----GGCCGUGGC-----UGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 73112 | 0.71 | 0.51878 |
Target: 5'- uUCCU-CGUCGGUGCCGGCgGAGGAu- -3' miRNA: 3'- uAGGAgGCGGCCGUGGCUG-CUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 164810 | 0.71 | 0.52809 |
Target: 5'- -gCCaCCGCCGGCacucugGCCGuuucCGAGGAGGa -3' miRNA: 3'- uaGGaGGCGGCCG------UGGCu---GCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 76370 | 0.71 | 0.556368 |
Target: 5'- cUCCaUCgCGCCGGCGCCGcCGcGGAu- -3' miRNA: 3'- uAGG-AG-GCGGCCGUGGCuGCuCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 164711 | 0.7 | 0.585068 |
Target: 5'- -gCCgCCGCCGGUcccACCacGCGGGGAAGg -3' miRNA: 3'- uaGGaGGCGGCCG---UGGc-UGCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 82545 | 0.7 | 0.598564 |
Target: 5'- uUCC-CCGCCGGCACCacauggugcuuccaGCGGGGcGAGa -3' miRNA: 3'- uAGGaGGCGGCCGUGGc-------------UGCUCC-UUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 97940 | 0.69 | 0.643121 |
Target: 5'- uUCCUCCGgCGGCAgCG-CGucGAAGu -3' miRNA: 3'- uAGGAGGCgGCCGUgGCuGCucCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 143149 | 0.68 | 0.700878 |
Target: 5'- -aCCUgCGUCGGUGaugaCGACGAGGAc- -3' miRNA: 3'- uaGGAgGCGGCCGUg---GCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 116090 | 0.68 | 0.691338 |
Target: 5'- cUCgUCgGCCGaGCucauCCGGCGAGGGGu -3' miRNA: 3'- uAGgAGgCGGC-CGu---GGCUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 99342 | 0.68 | 0.691338 |
Target: 5'- cUCCUCCGCCuccucGC-CCGACGAGcGuuGg -3' miRNA: 3'- uAGGAGGCGGc----CGuGGCUGCUC-CuuC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 127482 | 0.69 | 0.681753 |
Target: 5'- -aCC-CCGgCGcCACCGACGAGGAc- -3' miRNA: 3'- uaGGaGGCgGCcGUGGCUGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 483 | 0.69 | 0.681753 |
Target: 5'- -gCCUCCggGCCGcGCGCCGcguccGCG-GGAAGg -3' miRNA: 3'- uaGGAGG--CGGC-CGUGGC-----UGCuCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 115997 | 0.69 | 0.662481 |
Target: 5'- cUCgUCCGCCGacguGCGCCG-CGGGGGc- -3' miRNA: 3'- uAGgAGGCGGC----CGUGGCuGCUCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 111304 | 0.69 | 0.662481 |
Target: 5'- -aCCUCCGCCGGCAaggaucucgUCGGCGucaucuGGGu- -3' miRNA: 3'- uaGGAGGCGGCCGU---------GGCUGCu-----CCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 112007 | 0.71 | 0.52809 |
Target: 5'- gAUCCUCCGUCGGgAggagGACGAGGAGc -3' miRNA: 3'- -UAGGAGGCGGCCgUgg--CUGCUCCUUc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 201295 | 0.72 | 0.509536 |
Target: 5'- -cCCUCCGgCGGC-CgGGgGAGGAGGa -3' miRNA: 3'- uaGGAGGCgGCCGuGgCUgCUCCUUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 118760 | 0.73 | 0.438398 |
Target: 5'- uUCuCUCgGUcaCGGCGCCGACGAGGcAGa -3' miRNA: 3'- uAG-GAGgCG--GCCGUGGCUGCUCCuUC- -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 210615 | 0.73 | 0.42151 |
Target: 5'- -aCCUCCGCCGaCGCCGGCGGGu--- -3' miRNA: 3'- uaGGAGGCGGCcGUGGCUGCUCcuuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 77719 | 0.74 | 0.396126 |
Target: 5'- cGUCC-CCGCCGGCACCGcCGccgccgcAGGAc- -3' miRNA: 3'- -UAGGaGGCGGCCGUGGCuGC-------UCCUuc -5' |
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15746 | 3' | -60.2 | NC_004065.1 | + | 162161 | 0.66 | 0.841191 |
Target: 5'- gAUCggCCGCCGGCugCGGCGcAGc--- -3' miRNA: 3'- -UAGgaGGCGGCCGugGCUGC-UCcuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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