miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 102889 0.68 0.729157
Target:  5'- -gCCgCCGCCGGUagcgccgccGCCGcgAUGGGGGAGa -3'
miRNA:   3'- uaGGaGGCGGCCG---------UGGC--UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 131459 0.68 0.729157
Target:  5'- -cCCgUUCGCCGGauaCGACGAGGAc- -3'
miRNA:   3'- uaGG-AGGCGGCCgugGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 153651 0.68 0.738443
Target:  5'- cUCaUCCGCggCGGCGCCGGCGcgauGGAGa -3'
miRNA:   3'- uAGgAGGCG--GCCGUGGCUGCu---CCUUc -5'
15746 3' -60.2 NC_004065.1 + 67680 0.68 0.738443
Target:  5'- uUCCcggUCCGaUCGGC-UCGAUGAGGggGu -3'
miRNA:   3'- uAGG---AGGC-GGCCGuGGCUGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 33657 0.67 0.747646
Target:  5'- uUCgaCCGuCCGGCGC--GCGGGGAGGg -3'
miRNA:   3'- uAGgaGGC-GGCCGUGgcUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 190742 0.67 0.747646
Target:  5'- cUCCccaUUCGCCGGUuCUGAUGGGGAc- -3'
miRNA:   3'- uAGG---AGGCGGCCGuGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 2988 0.69 0.652809
Target:  5'- -aCCUCU--CGGCGCCGACGAaccaucGGGAGg -3'
miRNA:   3'- uaGGAGGcgGCCGUGGCUGCU------CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 147506 0.69 0.633426
Target:  5'- cGUCaUCCGCauguucggGGcCACCGAUGAGGggGu -3'
miRNA:   3'- -UAGgAGGCGg-------CC-GUGGCUGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 55384 0.7 0.61404
Target:  5'- aGUCCUCCGgcacCCGcGCaACCGACG-GGAGu -3'
miRNA:   3'- -UAGGAGGC----GGC-CG-UGGCUGCuCCUUc -5'
15746 3' -60.2 NC_004065.1 + 77719 0.74 0.396126
Target:  5'- cGUCC-CCGCCGGCACCGcCGccgccgcAGGAc- -3'
miRNA:   3'- -UAGGaGGCGGCCGUGGCuGC-------UCCUuc -5'
15746 3' -60.2 NC_004065.1 + 210615 0.73 0.42151
Target:  5'- -aCCUCCGCCGaCGCCGGCGGGu--- -3'
miRNA:   3'- uaGGAGGCGGCcGUGGCUGCUCcuuc -5'
15746 3' -60.2 NC_004065.1 + 118760 0.73 0.438398
Target:  5'- uUCuCUCgGUcaCGGCGCCGACGAGGcAGa -3'
miRNA:   3'- uAG-GAGgCG--GCCGUGGCUGCUCCuUC- -5'
15746 3' -60.2 NC_004065.1 + 201295 0.72 0.509536
Target:  5'- -cCCUCCGgCGGC-CgGGgGAGGAGGa -3'
miRNA:   3'- uaGGAGGCgGCCGuGgCUgCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 112007 0.71 0.52809
Target:  5'- gAUCCUCCGUCGGgAggagGACGAGGAGc -3'
miRNA:   3'- -UAGGAGGCGGCCgUgg--CUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 133357 0.71 0.545944
Target:  5'- gAUCCUCCGUCGGgcgagccCGCCGACGccGAGa -3'
miRNA:   3'- -UAGGAGGCGGCC-------GUGGCUGCucCUUc -5'
15746 3' -60.2 NC_004065.1 + 63882 0.71 0.556368
Target:  5'- -gCCgcugCCGCCGGCGCCGACGu----- -3'
miRNA:   3'- uaGGa---GGCGGCCGUGGCUGCuccuuc -5'
15746 3' -60.2 NC_004065.1 + 99150 0.7 0.575463
Target:  5'- -aCCUCaCGCCGGCGCC--CGAGGcuGg -3'
miRNA:   3'- uaGGAG-GCGGCCGUGGcuGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 141618 0.7 0.575463
Target:  5'- cUCCgCUGCCGGCGguggcggcUCGGCGAcGGAGGg -3'
miRNA:   3'- uAGGaGGCGGCCGU--------GGCUGCU-CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 152531 0.7 0.585068
Target:  5'- --gCUCCGCCGGCGCCGGCu------ -3'
miRNA:   3'- uagGAGGCGGCCGUGGCUGcuccuuc -5'
15746 3' -60.2 NC_004065.1 + 148605 0.7 0.585068
Target:  5'- aGUUCUCCGCCGGg---GACGAGGGAc -3'
miRNA:   3'- -UAGGAGGCGGCCguggCUGCUCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.