miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 131459 0.68 0.729157
Target:  5'- -cCCgUUCGCCGGauaCGACGAGGAc- -3'
miRNA:   3'- uaGG-AGGCGGCCgugGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 102889 0.68 0.729157
Target:  5'- -gCCgCCGCCGGUagcgccgccGCCGcgAUGGGGGAGa -3'
miRNA:   3'- uaGGaGGCGGCCG---------UGGC--UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 82784 0.68 0.691338
Target:  5'- -gCgUCCGgUGGCGCCGACccauccggggguGGGGAAGu -3'
miRNA:   3'- uaGgAGGCgGCCGUGGCUG------------CUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 152531 0.7 0.585068
Target:  5'- --gCUCCGCCGGCGCCGGCu------ -3'
miRNA:   3'- uagGAGGCGGCCGUGGCUGcuccuuc -5'
15746 3' -60.2 NC_004065.1 + 164202 0.67 0.780845
Target:  5'- -aUCUCCGCCGGCAUCGcguucACGAucgccucgauccgcGGGAu -3'
miRNA:   3'- uaGGAGGCGGCCGUGGC-----UGCU--------------CCUUc -5'
15746 3' -60.2 NC_004065.1 + 107743 0.67 0.755851
Target:  5'- gAUCCUCgGCCGGCggauGCCccaggucggugucGGCGcGGGAGc -3'
miRNA:   3'- -UAGGAGgCGGCCG----UGG-------------CUGCuCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 86151 0.68 0.710367
Target:  5'- uUCUUCaCGCCGGCGCCGuucuUGGcGGAu- -3'
miRNA:   3'- uAGGAG-GCGGCCGUGGCu---GCU-CCUuc -5'
15746 3' -60.2 NC_004065.1 + 141618 0.7 0.575463
Target:  5'- cUCCgCUGCCGGCGguggcggcUCGGCGAcGGAGGg -3'
miRNA:   3'- uAGGaGGCGGCCGU--------GGCUGCU-CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 190742 0.67 0.747646
Target:  5'- cUCCccaUUCGCCGGUuCUGAUGGGGAc- -3'
miRNA:   3'- uAGG---AGGCGGCCGuGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 99150 0.7 0.575463
Target:  5'- -aCCUCaCGCCGGCGCC--CGAGGcuGg -3'
miRNA:   3'- uaGGAG-GCGGCCGUGGcuGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 187205 0.68 0.719795
Target:  5'- -cCCUCCGCaCGGgGgagGAUGAGGAAGa -3'
miRNA:   3'- uaGGAGGCG-GCCgUgg-CUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 153651 0.68 0.738443
Target:  5'- cUCaUCCGCggCGGCGCCGGCGcgauGGAGa -3'
miRNA:   3'- uAGgAGGCG--GCCGUGGCUGCu---CCUUc -5'
15746 3' -60.2 NC_004065.1 + 28990 0.68 0.700878
Target:  5'- -gUCUCCGgCGGCGgUGGCGAGGc-- -3'
miRNA:   3'- uaGGAGGCgGCCGUgGCUGCUCCuuc -5'
15746 3' -60.2 NC_004065.1 + 180358 0.68 0.691338
Target:  5'- cUgCUCCGgCGGCACCGccACG-GGAAa -3'
miRNA:   3'- uAgGAGGCgGCCGUGGC--UGCuCCUUc -5'
15746 3' -60.2 NC_004065.1 + 2988 0.69 0.652809
Target:  5'- -aCCUCU--CGGCGCCGACGAaccaucGGGAGg -3'
miRNA:   3'- uaGGAGGcgGCCGUGGCUGCU------CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 148605 0.7 0.585068
Target:  5'- aGUUCUCCGCCGGg---GACGAGGGAc -3'
miRNA:   3'- -UAGGAGGCGGCCguggCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 141699 0.67 0.79214
Target:  5'- uUUCUCCGCUcuguuuucaGGCG-CGACGAGGccGAGg -3'
miRNA:   3'- uAGGAGGCGG---------CCGUgGCUGCUCC--UUC- -5'
15746 3' -60.2 NC_004065.1 + 147470 0.67 0.782596
Target:  5'- -gCC-CCGCUggaagcaccauguGGUGCCGGCGGGGAa- -3'
miRNA:   3'- uaGGaGGCGG-------------CCGUGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 212759 0.67 0.774678
Target:  5'- -aCCUCCGgCGGUGaaGAaGAGGAGGu -3'
miRNA:   3'- uaGGAGGCgGCCGUggCUgCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 111713 0.67 0.756758
Target:  5'- -gUC-CCGCUGGCgacgagaacGCCGAUGAGGAc- -3'
miRNA:   3'- uaGGaGGCGGCCG---------UGGCUGCUCCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.