miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 122935 0.67 0.774678
Target:  5'- -aCCcgaCGCCGGCGuuCCaGACGAGGAu- -3'
miRNA:   3'- uaGGag-GCGGCCGU--GG-CUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 63076 0.66 0.825453
Target:  5'- ----gUCGCCGGuCGCCGGCGAGcGAc- -3'
miRNA:   3'- uaggaGGCGGCC-GUGGCUGCUC-CUuc -5'
15746 3' -60.2 NC_004065.1 + 111713 0.67 0.756758
Target:  5'- -gUC-CCGCUGGCgacgagaacGCCGAUGAGGAc- -3'
miRNA:   3'- uaGGaGGCGGCCG---------UGGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 164202 0.67 0.780845
Target:  5'- -aUCUCCGCCGGCAUCGcguucACGAucgccucgauccgcGGGAu -3'
miRNA:   3'- uaGGAGGCGGCCGUGGC-----UGCU--------------CCUUc -5'
15746 3' -60.2 NC_004065.1 + 153280 0.67 0.788687
Target:  5'- --aCgaggCCGCCGGCGCCGcgcccguccccgcCGAGGAGu -3'
miRNA:   3'- uagGa---GGCGGCCGUGGCu------------GCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 133503 0.66 0.833404
Target:  5'- cUCCUCggacucguCGUCGuccuCCGACGAGGAGGa -3'
miRNA:   3'- uAGGAG--------GCGGCcgu-GGCUGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 34922 0.66 0.825453
Target:  5'- ----aCCGCCGGCAgCUGACGccccuGGggGu -3'
miRNA:   3'- uaggaGGCGGCCGU-GGCUGCu----CCuuC- -5'
15746 3' -60.2 NC_004065.1 + 197486 0.66 0.817344
Target:  5'- ----aCCGCCGGCG-CGACGGGGccGu -3'
miRNA:   3'- uaggaGGCGGCCGUgGCUGCUCCuuC- -5'
15746 3' -60.2 NC_004065.1 + 174111 0.66 0.816525
Target:  5'- -aCUUCUGCCGGCGCgGACuccgugaGAGGu-- -3'
miRNA:   3'- uaGGAGGCGGCCGUGgCUG-------CUCCuuc -5'
15746 3' -60.2 NC_004065.1 + 30150 0.66 0.809085
Target:  5'- -aCCggCCGCucgugcugugCGGCACCGACGAGu--- -3'
miRNA:   3'- uaGGa-GGCG----------GCCGUGGCUGCUCcuuc -5'
15746 3' -60.2 NC_004065.1 + 141699 0.67 0.79214
Target:  5'- uUUCUCCGCUcuguuuucaGGCG-CGACGAGGccGAGg -3'
miRNA:   3'- uAGGAGGCGG---------CCGUgGCUGCUCC--UUC- -5'
15746 3' -60.2 NC_004065.1 + 138815 0.66 0.841191
Target:  5'- cUUCUCCGgCGGCGCCGAUGc----- -3'
miRNA:   3'- uAGGAGGCgGCCGUGGCUGCuccuuc -5'
15746 3' -60.2 NC_004065.1 + 137491 0.66 0.825453
Target:  5'- uUCCcgugCCGCCGGgGC--ACGAGGAAc -3'
miRNA:   3'- uAGGa---GGCGGCCgUGgcUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 42082 0.66 0.831036
Target:  5'- -aCCUCgcugaugugcgcguCGCCGGCGCCGACGuacGuGAc- -3'
miRNA:   3'- uaGGAG--------------GCGGCCGUGGCUGCu--C-CUuc -5'
15746 3' -60.2 NC_004065.1 + 66775 0.66 0.817344
Target:  5'- -gCCggcgCCGCCGcuGCGCCGACGAaacaugagcGGAc- -3'
miRNA:   3'- uaGGa---GGCGGC--CGUGGCUGCU---------CCUuc -5'
15746 3' -60.2 NC_004065.1 + 109824 0.66 0.809085
Target:  5'- -cCCUCguCGCCGuccuGCugCGGCGGGGGGc -3'
miRNA:   3'- uaGGAG--GCGGC----CGugGCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 164711 0.7 0.585068
Target:  5'- -gCCgCCGCCGGUcccACCacGCGGGGAAGg -3'
miRNA:   3'- uaGGaGGCGGCCG---UGGc-UGCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 169716 0.66 0.833404
Target:  5'- -gCgUCCGUCGGCugCGG-GAcGGGAGa -3'
miRNA:   3'- uaGgAGGCGGCCGugGCUgCU-CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 99342 0.68 0.691338
Target:  5'- cUCCUCCGCCuccucGC-CCGACGAGcGuuGg -3'
miRNA:   3'- uAGGAGGCGGc----CGuGGCUGCUC-CuuC- -5'
15746 3' -60.2 NC_004065.1 + 116090 0.68 0.691338
Target:  5'- cUCgUCgGCCGaGCucauCCGGCGAGGGGu -3'
miRNA:   3'- uAGgAGgCGGC-CGu---GGCUGCUCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.