miRNA display CGI


Results 61 - 80 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15746 3' -60.2 NC_004065.1 + 164810 0.71 0.52809
Target:  5'- -gCCaCCGCCGGCacucugGCCGuuucCGAGGAGGa -3'
miRNA:   3'- uaGGaGGCGGCCG------UGGCu---GCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 115997 0.69 0.662481
Target:  5'- cUCgUCCGCCGacguGCGCCG-CGGGGGc- -3'
miRNA:   3'- uAGgAGGCGGC----CGUGGCuGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 76370 0.71 0.556368
Target:  5'- cUCCaUCgCGCCGGCGCCGcCGcGGAu- -3'
miRNA:   3'- uAGG-AG-GCGGCCGUGGCuGCuCCUuc -5'
15746 3' -60.2 NC_004065.1 + 90111 0.68 0.738443
Target:  5'- uUCaacCCGCUGGCGCCGcCGGccGGAGGc -3'
miRNA:   3'- uAGga-GGCGGCCGUGGCuGCU--CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 172069 0.67 0.756758
Target:  5'- gGUCCUCCGUgGcCGCCGcgguucgaGCGGGGGAc -3'
miRNA:   3'- -UAGGAGGCGgCcGUGGC--------UGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 113485 0.66 0.841191
Target:  5'- aAUCCUCCacgGUCGGCACCguacgucucuuuGACGccGAGGc -3'
miRNA:   3'- -UAGGAGG---CGGCCGUGG------------CUGCucCUUC- -5'
15746 3' -60.2 NC_004065.1 + 55442 0.66 0.841191
Target:  5'- gGUCUUCgaGUCGGCGCUG--GGGGAAGg -3'
miRNA:   3'- -UAGGAGg-CGGCCGUGGCugCUCCUUC- -5'
15746 3' -60.2 NC_004065.1 + 114953 0.66 0.832616
Target:  5'- aGUCggcgCCGCCGGCcuccagaACCGAUGAGuucGGAGa -3'
miRNA:   3'- -UAGga--GGCGGCCG-------UGGCUGCUC---CUUC- -5'
15746 3' -60.2 NC_004065.1 + 169716 0.66 0.833404
Target:  5'- -gCgUCCGUCGGCugCGG-GAcGGGAGa -3'
miRNA:   3'- uaGgAGGCGGCCGugGCUgCU-CCUUC- -5'
15746 3' -60.2 NC_004065.1 + 42082 0.66 0.831036
Target:  5'- -aCCUCgcugaugugcgcguCGCCGGCGCCGACGuacGuGAc- -3'
miRNA:   3'- uaGGAG--------------GCGGCCGUGGCUGCu--C-CUuc -5'
15746 3' -60.2 NC_004065.1 + 137491 0.66 0.825453
Target:  5'- uUCCcgugCCGCCGGgGC--ACGAGGAAc -3'
miRNA:   3'- uAGGa---GGCGGCCgUGgcUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 66775 0.66 0.817344
Target:  5'- -gCCggcgCCGCCGcuGCGCCGACGAaacaugagcGGAc- -3'
miRNA:   3'- uaGGa---GGCGGC--CGUGGCUGCU---------CCUuc -5'
15746 3' -60.2 NC_004065.1 + 109824 0.66 0.809085
Target:  5'- -cCCUCguCGCCGuccuGCugCGGCGGGGGGc -3'
miRNA:   3'- uaGGAG--GCGGC----CGugGCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 111257 0.66 0.809085
Target:  5'- -gCCUCUGCCucgucGGCGCCGugacCGAGaaGAAGa -3'
miRNA:   3'- uaGGAGGCGG-----CCGUGGCu---GCUC--CUUC- -5'
15746 3' -60.2 NC_004065.1 + 100892 0.66 0.800681
Target:  5'- cUCCUCCGCCGcGCACUGcugauCGuccGGcAGg -3'
miRNA:   3'- uAGGAGGCGGC-CGUGGCu----GCu--CCuUC- -5'
15746 3' -60.2 NC_004065.1 + 99615 0.67 0.79214
Target:  5'- --aUUCCGCCGGaCGgucgcgauacCCGGCGGGGAc- -3'
miRNA:   3'- uagGAGGCGGCC-GU----------GGCUGCUCCUuc -5'
15746 3' -60.2 NC_004065.1 + 34369 0.67 0.78347
Target:  5'- -cCCUCCGCCgcucGGCuGCCGG-GAGGcGAGg -3'
miRNA:   3'- uaGGAGGCGG----CCG-UGGCUgCUCC-UUC- -5'
15746 3' -60.2 NC_004065.1 + 152929 0.67 0.78347
Target:  5'- -gCUgCCGCCgcGGCAaaUCGACGAGGAGa -3'
miRNA:   3'- uaGGaGGCGG--CCGU--GGCUGCUCCUUc -5'
15746 3' -60.2 NC_004065.1 + 25481 0.67 0.78347
Target:  5'- -aCCUcCCGCC-GC-CCGACGAGGc-- -3'
miRNA:   3'- uaGGA-GGCGGcCGuGGCUGCUCCuuc -5'
15746 3' -60.2 NC_004065.1 + 120583 0.67 0.774678
Target:  5'- -aCCUCCggcGCCGGUcucgGCCGggugcACGAGGAu- -3'
miRNA:   3'- uaGGAGG---CGGCCG----UGGC-----UGCUCCUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.