miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15747 3' -55.4 NC_004065.1 + 42002 0.66 0.971812
Target:  5'- gUCGUGuuGGUcgugucUACCGUCGCGGacCUCc -3'
miRNA:   3'- -AGCGCggCUA------AUGGUAGUGCCc-GAGu -5'
15747 3' -55.4 NC_004065.1 + 118485 0.66 0.971812
Target:  5'- -aGUGCCaggUGCCGUCcCGGGC-CGa -3'
miRNA:   3'- agCGCGGcuaAUGGUAGuGCCCGaGU- -5'
15747 3' -55.4 NC_004065.1 + 55785 0.66 0.971812
Target:  5'- -gGCGCCGAgcagGCgAUCGC-GGCUg- -3'
miRNA:   3'- agCGCGGCUaa--UGgUAGUGcCCGAgu -5'
15747 3' -55.4 NC_004065.1 + 51122 0.66 0.968983
Target:  5'- cUGCGCCGAUUGCUgcggCACGuagcGGCg-- -3'
miRNA:   3'- aGCGCGGCUAAUGGua--GUGC----CCGagu -5'
15747 3' -55.4 NC_004065.1 + 162265 0.66 0.968983
Target:  5'- cCGCGCCGuucgucacGCCGUCggacGCGGcgccGCUCGg -3'
miRNA:   3'- aGCGCGGCuaa-----UGGUAG----UGCC----CGAGU- -5'
15747 3' -55.4 NC_004065.1 + 78876 0.66 0.968983
Target:  5'- cUCGCggucGCCGAcgAUCAUCGCGGcGUUg- -3'
miRNA:   3'- -AGCG----CGGCUaaUGGUAGUGCC-CGAgu -5'
15747 3' -55.4 NC_004065.1 + 163291 0.66 0.968983
Target:  5'- aCGcCGCCGGgguCCGacggCACGGGCg-- -3'
miRNA:   3'- aGC-GCGGCUaauGGUa---GUGCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 103772 0.66 0.967797
Target:  5'- aCGCGCUGGgcggcucgaucCCcgCACGGGCg-- -3'
miRNA:   3'- aGCGCGGCUaau--------GGuaGUGCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 27087 0.66 0.965957
Target:  5'- cUCGUGUCGAgucaagGgUAUCGCgaccGGGCUCGa -3'
miRNA:   3'- -AGCGCGGCUaa----UgGUAGUG----CCCGAGU- -5'
15747 3' -55.4 NC_004065.1 + 194769 0.66 0.965957
Target:  5'- cUCGCGCCGucccgagACCGggucgCGCaGGGCg-- -3'
miRNA:   3'- -AGCGCGGCuaa----UGGUa----GUG-CCCGagu -5'
15747 3' -55.4 NC_004065.1 + 37884 0.66 0.965957
Target:  5'- -aGCGCgGAagGCCGUCugGcGGC-CGu -3'
miRNA:   3'- agCGCGgCUaaUGGUAGugC-CCGaGU- -5'
15747 3' -55.4 NC_004065.1 + 61254 0.66 0.96273
Target:  5'- -gGCGUCGAagGCCugcgcggcGUCgACGGGCUUg -3'
miRNA:   3'- agCGCGGCUaaUGG--------UAG-UGCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 38456 0.66 0.959295
Target:  5'- gCGCGCCGAUcACCG-CACGcGuGCg-- -3'
miRNA:   3'- aGCGCGGCUAaUGGUaGUGC-C-CGagu -5'
15747 3' -55.4 NC_004065.1 + 101453 0.66 0.959295
Target:  5'- uUCGcCGCCGAcgucgcUGCCGcUGCGGGCgCAg -3'
miRNA:   3'- -AGC-GCGGCUa-----AUGGUaGUGCCCGaGU- -5'
15747 3' -55.4 NC_004065.1 + 152494 0.66 0.959295
Target:  5'- gCGCGCCGGUacuuguCCAgCAgccgcagcuccuCGGGCUCc -3'
miRNA:   3'- aGCGCGGCUAau----GGUaGU------------GCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 169855 0.66 0.959295
Target:  5'- cCGCGaCgGGUUcggggACgGUgACGGGCUCGg -3'
miRNA:   3'- aGCGC-GgCUAA-----UGgUAgUGCCCGAGU- -5'
15747 3' -55.4 NC_004065.1 + 77361 0.66 0.955648
Target:  5'- cUCGCGCCGuc-GCCGcCGuuGGCUCc -3'
miRNA:   3'- -AGCGCGGCuaaUGGUaGUgcCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 200015 0.66 0.955648
Target:  5'- cCGCGCCGGUgACgGUCGCGcagccucuGGCg-- -3'
miRNA:   3'- aGCGCGGCUAaUGgUAGUGC--------CCGagu -5'
15747 3' -55.4 NC_004065.1 + 197258 0.67 0.951786
Target:  5'- gCGUGCCGAUagggUGCCGgaucaucggUCACGGGg--- -3'
miRNA:   3'- aGCGCGGCUA----AUGGU---------AGUGCCCgagu -5'
15747 3' -55.4 NC_004065.1 + 117989 0.67 0.951786
Target:  5'- gUCG-GCCGAUUcgGCCGcgguuCGGGCUCc -3'
miRNA:   3'- -AGCgCGGCUAA--UGGUagu--GCCCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.