miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15747 3' -55.4 NC_004065.1 + 155804 1.09 0.005108
Target:  5'- cUCGCGCCGAUUACCAUCACGGGCUCAg -3'
miRNA:   3'- -AGCGCGGCUAAUGGUAGUGCCCGAGU- -5'
15747 3' -55.4 NC_004065.1 + 40480 0.77 0.484362
Target:  5'- uUCGCGCUGGgguccagGCCGcUCGCGGGCUa- -3'
miRNA:   3'- -AGCGCGGCUaa-----UGGU-AGUGCCCGAgu -5'
15747 3' -55.4 NC_004065.1 + 97269 0.74 0.650447
Target:  5'- uUCGCGCCGGUaggUGCCGUUggGGuGCUUc -3'
miRNA:   3'- -AGCGCGGCUA---AUGGUAGugCC-CGAGu -5'
15747 3' -55.4 NC_004065.1 + 126170 0.72 0.719516
Target:  5'- aUCGCGUggugcgCGAUcGCCGUCACGGcGUUCu -3'
miRNA:   3'- -AGCGCG------GCUAaUGGUAGUGCC-CGAGu -5'
15747 3' -55.4 NC_004065.1 + 745 0.72 0.729164
Target:  5'- aCGCGaCCaGcgUGCCgcGUCGCGGGUUCGc -3'
miRNA:   3'- aGCGC-GG-CuaAUGG--UAGUGCCCGAGU- -5'
15747 3' -55.4 NC_004065.1 + 145763 0.72 0.757597
Target:  5'- aUCGCGUCGcgcGCCgGUCGCGGGCg-- -3'
miRNA:   3'- -AGCGCGGCuaaUGG-UAGUGCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 5680 0.71 0.776037
Target:  5'- cCGUGCUGAUcgUCAUCACGuGGUUCGu -3'
miRNA:   3'- aGCGCGGCUAauGGUAGUGC-CCGAGU- -5'
15747 3' -55.4 NC_004065.1 + 76374 0.71 0.793986
Target:  5'- aUCGCGCCGGc-GCCGcCGCGGaugaGCUCGc -3'
miRNA:   3'- -AGCGCGGCUaaUGGUaGUGCC----CGAGU- -5'
15747 3' -55.4 NC_004065.1 + 135600 0.71 0.801014
Target:  5'- aCGCGCCGcugggagacgGCCGUCACGcGGgUCu -3'
miRNA:   3'- aGCGCGGCuaa-------UGGUAGUGC-CCgAGu -5'
15747 3' -55.4 NC_004065.1 + 159658 0.71 0.802757
Target:  5'- aUCGCGCCagcgucuCCGUCcUGGGCUCu -3'
miRNA:   3'- -AGCGCGGcuaau--GGUAGuGCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 146625 0.7 0.819847
Target:  5'- cCGUGUcuuCGGUggugaacGCCGUCACGGGCUUc -3'
miRNA:   3'- aGCGCG---GCUAa------UGGUAGUGCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 110293 0.7 0.836287
Target:  5'- cUCGCG-CGAcccgGCCGUCACGGuCUCGc -3'
miRNA:   3'- -AGCGCgGCUaa--UGGUAGUGCCcGAGU- -5'
15747 3' -55.4 NC_004065.1 + 51644 0.7 0.844246
Target:  5'- gUCGCGUCGGau-CCAggagagCGCGGGUUCc -3'
miRNA:   3'- -AGCGCGGCUaauGGUa-----GUGCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 197021 0.7 0.85202
Target:  5'- aUC-CGaCCGAcgACCGUCAgGGGUUCGu -3'
miRNA:   3'- -AGcGC-GGCUaaUGGUAGUgCCCGAGU- -5'
15747 3' -55.4 NC_004065.1 + 195521 0.7 0.858855
Target:  5'- -gGUGCCGAcuucgccaaguggUUGgCGUUGCGGGCUCc -3'
miRNA:   3'- agCGCGGCU-------------AAUgGUAGUGCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 34503 0.69 0.864062
Target:  5'- aUCGCGCCGcgcuggacgggACCGggcgcucugaCGCGGGCUCc -3'
miRNA:   3'- -AGCGCGGCuaa--------UGGUa---------GUGCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 192159 0.69 0.866994
Target:  5'- aUCGUGCCGAUcaccGCCGUCGCGaagugaauGGCg-- -3'
miRNA:   3'- -AGCGCGGCUAa---UGGUAGUGC--------CCGagu -5'
15747 3' -55.4 NC_004065.1 + 59725 0.69 0.866994
Target:  5'- -gGCGCaCGGcgACCGUCGCGGaCUCu -3'
miRNA:   3'- agCGCG-GCUaaUGGUAGUGCCcGAGu -5'
15747 3' -55.4 NC_004065.1 + 186878 0.69 0.866994
Target:  5'- -gGaCGCCGGggggGCCAUCuACGGGCa-- -3'
miRNA:   3'- agC-GCGGCUaa--UGGUAG-UGCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 16456 0.69 0.874181
Target:  5'- cUCGUGUuuaacaCGAcaucugACCGUCACGuGGCUCAc -3'
miRNA:   3'- -AGCGCG------GCUaa----UGGUAGUGC-CCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.