miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15747 3' -55.4 NC_004065.1 + 205505 0.67 0.947705
Target:  5'- gUCGCuGCCGcc-GCCAUCuuggggcCGGcGCUCAg -3'
miRNA:   3'- -AGCG-CGGCuaaUGGUAGu------GCC-CGAGU- -5'
15747 3' -55.4 NC_004065.1 + 171425 0.67 0.947705
Target:  5'- gCGCGUCGAUcucgacuccGCCGUCGuCGGcgaGCUCAu -3'
miRNA:   3'- aGCGCGGCUAa--------UGGUAGU-GCC---CGAGU- -5'
15747 3' -55.4 NC_004065.1 + 155842 0.67 0.947705
Target:  5'- gUGCGCUGGaggGCgGUCAUcGGCUCGa -3'
miRNA:   3'- aGCGCGGCUaa-UGgUAGUGcCCGAGU- -5'
15747 3' -55.4 NC_004065.1 + 136205 0.67 0.943401
Target:  5'- cCGCGCCGucaccaGCCAgUCGCcgGGGCUgGg -3'
miRNA:   3'- aGCGCGGCuaa---UGGU-AGUG--CCCGAgU- -5'
15747 3' -55.4 NC_004065.1 + 83170 0.67 0.943401
Target:  5'- aCGCGCCGAUgcagACCAggcgcUCccgGCGGcccGCUCu -3'
miRNA:   3'- aGCGCGGCUAa---UGGU-----AG---UGCC---CGAGu -5'
15747 3' -55.4 NC_004065.1 + 182713 0.67 0.943401
Target:  5'- cCGcCGCgGAUcgGCC-UCACGGGCg-- -3'
miRNA:   3'- aGC-GCGgCUAa-UGGuAGUGCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 197562 0.67 0.943401
Target:  5'- gCGCGCCGAcgACCuggugggCAUGcGGCUg- -3'
miRNA:   3'- aGCGCGGCUaaUGGua-----GUGC-CCGAgu -5'
15747 3' -55.4 NC_004065.1 + 105799 0.67 0.938873
Target:  5'- uUCGCGCaCGAgUACCAcCACuGGCa-- -3'
miRNA:   3'- -AGCGCG-GCUaAUGGUaGUGcCCGagu -5'
15747 3' -55.4 NC_004065.1 + 169570 0.67 0.934119
Target:  5'- gCGCGCUG-UUGCCGcugUCGC-GGCUCc -3'
miRNA:   3'- aGCGCGGCuAAUGGU---AGUGcCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 122267 0.67 0.934119
Target:  5'- cCGCGCCGAc-ACCGacCugGGGCa-- -3'
miRNA:   3'- aGCGCGGCUaaUGGUa-GugCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 106655 0.68 0.929138
Target:  5'- gUCGCGCC---UGCCucccgauacgCACGGGCUg- -3'
miRNA:   3'- -AGCGCGGcuaAUGGua--------GUGCCCGAgu -5'
15747 3' -55.4 NC_004065.1 + 163017 0.68 0.923929
Target:  5'- cCGCGCgGGgc-CCGUaCACGGGCg-- -3'
miRNA:   3'- aGCGCGgCUaauGGUA-GUGCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 194541 0.68 0.923929
Target:  5'- gUCGUGCCcGUgaacgUCGUCACGGGCa-- -3'
miRNA:   3'- -AGCGCGGcUAau---GGUAGUGCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 29229 0.68 0.923929
Target:  5'- cCGCGCCGAgacGCCGUCGCccGC-CAc -3'
miRNA:   3'- aGCGCGGCUaa-UGGUAGUGccCGaGU- -5'
15747 3' -55.4 NC_004065.1 + 118169 0.68 0.918491
Target:  5'- cCGCGgCGGcgGCCGUCACGGcugccgccGUUCGg -3'
miRNA:   3'- aGCGCgGCUaaUGGUAGUGCC--------CGAGU- -5'
15747 3' -55.4 NC_004065.1 + 193732 0.68 0.918491
Target:  5'- -aGCGUCGAaggcGCCAUCGCcucGGCUCu -3'
miRNA:   3'- agCGCGGCUaa--UGGUAGUGc--CCGAGu -5'
15747 3' -55.4 NC_004065.1 + 106613 0.68 0.918491
Target:  5'- gUGCGCCGAcu-CCAUCA-GGGCc-- -3'
miRNA:   3'- aGCGCGGCUaauGGUAGUgCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 26949 0.68 0.906937
Target:  5'- cCGCuCCGGcgGCCGcgGCGGGCUCc -3'
miRNA:   3'- aGCGcGGCUaaUGGUagUGCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 88965 0.69 0.881162
Target:  5'- cUCGCGCgUGAUggugGCCAcCugGGGCg-- -3'
miRNA:   3'- -AGCGCG-GCUAa---UGGUaGugCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 197360 0.69 0.881162
Target:  5'- aCGgGCCGAUUcuCCGcCGCGGGC-CGu -3'
miRNA:   3'- aGCgCGGCUAAu-GGUaGUGCCCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.