miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15747 3' -55.4 NC_004065.1 + 122267 0.67 0.934119
Target:  5'- cCGCGCCGAc-ACCGacCugGGGCa-- -3'
miRNA:   3'- aGCGCGGCUaaUGGUa-GugCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 88965 0.69 0.881162
Target:  5'- cUCGCGCgUGAUggugGCCAcCugGGGCg-- -3'
miRNA:   3'- -AGCGCG-GCUAa---UGGUaGugCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 197360 0.69 0.881162
Target:  5'- aCGgGCCGAUUcuCCGcCGCGGGC-CGu -3'
miRNA:   3'- aGCgCGGCUAAu-GGUaGUGCCCGaGU- -5'
15747 3' -55.4 NC_004065.1 + 26949 0.68 0.906937
Target:  5'- cCGCuCCGGcgGCCGcgGCGGGCUCc -3'
miRNA:   3'- aGCGcGGCUaaUGGUagUGCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 193732 0.68 0.918491
Target:  5'- -aGCGUCGAaggcGCCAUCGCcucGGCUCu -3'
miRNA:   3'- agCGCGGCUaa--UGGUAGUGc--CCGAGu -5'
15747 3' -55.4 NC_004065.1 + 106613 0.68 0.918491
Target:  5'- gUGCGCCGAcu-CCAUCA-GGGCc-- -3'
miRNA:   3'- aGCGCGGCUaauGGUAGUgCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 118169 0.68 0.918491
Target:  5'- cCGCGgCGGcgGCCGUCACGGcugccgccGUUCGg -3'
miRNA:   3'- aGCGCgGCUaaUGGUAGUGCC--------CGAGU- -5'
15747 3' -55.4 NC_004065.1 + 106655 0.68 0.929138
Target:  5'- gUCGCGCC---UGCCucccgauacgCACGGGCUg- -3'
miRNA:   3'- -AGCGCGGcuaAUGGua--------GUGCCCGAgu -5'
15747 3' -55.4 NC_004065.1 + 169570 0.67 0.934119
Target:  5'- gCGCGCUG-UUGCCGcugUCGC-GGCUCc -3'
miRNA:   3'- aGCGCGGCuAAUGGU---AGUGcCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 91272 0.69 0.874181
Target:  5'- cCGCGCCGAccugcACCuUCACGGcCUCu -3'
miRNA:   3'- aGCGCGGCUaa---UGGuAGUGCCcGAGu -5'
15747 3' -55.4 NC_004065.1 + 16456 0.69 0.874181
Target:  5'- cUCGUGUuuaacaCGAcaucugACCGUCACGuGGCUCAc -3'
miRNA:   3'- -AGCGCG------GCUaa----UGGUAGUGC-CCGAGU- -5'
15747 3' -55.4 NC_004065.1 + 59725 0.69 0.866994
Target:  5'- -gGCGCaCGGcgACCGUCGCGGaCUCu -3'
miRNA:   3'- agCGCG-GCUaaUGGUAGUGCCcGAGu -5'
15747 3' -55.4 NC_004065.1 + 126170 0.72 0.719516
Target:  5'- aUCGCGUggugcgCGAUcGCCGUCACGGcGUUCu -3'
miRNA:   3'- -AGCGCG------GCUAaUGGUAGUGCC-CGAGu -5'
15747 3' -55.4 NC_004065.1 + 145763 0.72 0.757597
Target:  5'- aUCGCGUCGcgcGCCgGUCGCGGGCg-- -3'
miRNA:   3'- -AGCGCGGCuaaUGG-UAGUGCCCGagu -5'
15747 3' -55.4 NC_004065.1 + 76374 0.71 0.793986
Target:  5'- aUCGCGCCGGc-GCCGcCGCGGaugaGCUCGc -3'
miRNA:   3'- -AGCGCGGCUaaUGGUaGUGCC----CGAGU- -5'
15747 3' -55.4 NC_004065.1 + 135600 0.71 0.801014
Target:  5'- aCGCGCCGcugggagacgGCCGUCACGcGGgUCu -3'
miRNA:   3'- aGCGCGGCuaa-------UGGUAGUGC-CCgAGu -5'
15747 3' -55.4 NC_004065.1 + 110293 0.7 0.836287
Target:  5'- cUCGCG-CGAcccgGCCGUCACGGuCUCGc -3'
miRNA:   3'- -AGCGCgGCUaa--UGGUAGUGCCcGAGU- -5'
15747 3' -55.4 NC_004065.1 + 51644 0.7 0.844246
Target:  5'- gUCGCGUCGGau-CCAggagagCGCGGGUUCc -3'
miRNA:   3'- -AGCGCGGCUaauGGUa-----GUGCCCGAGu -5'
15747 3' -55.4 NC_004065.1 + 197021 0.7 0.85202
Target:  5'- aUC-CGaCCGAcgACCGUCAgGGGUUCGu -3'
miRNA:   3'- -AGcGC-GGCUaaUGGUAGUgCCCGAGU- -5'
15747 3' -55.4 NC_004065.1 + 186878 0.69 0.866994
Target:  5'- -gGaCGCCGGggggGCCAUCuACGGGCa-- -3'
miRNA:   3'- agC-GCGGCUaa--UGGUAG-UGCCCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.