miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15747 5' -60.7 NC_004065.1 + 171945 0.66 0.827439
Target:  5'- gGGUcucGCGCaaGGcGGGCGGUgG-CGGCg -3'
miRNA:   3'- -CCA---CGCGa-CCuCCCGCCAgUaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 200578 0.66 0.827439
Target:  5'- cGG-GUGgaGaAGGGUGGUCG-CGGCg -3'
miRNA:   3'- -CCaCGCgaCcUCCCGCCAGUaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 62373 0.66 0.827439
Target:  5'- cGGUG-GCgGcGGGGGUGGUgG-CGGCg -3'
miRNA:   3'- -CCACgCGaC-CUCCCGCCAgUaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 198009 0.66 0.819408
Target:  5'- -cUGCGCgauggccucGGAGGcggucGCGGUCGcCGGCg -3'
miRNA:   3'- ccACGCGa--------CCUCC-----CGCCAGUaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 102121 0.66 0.818596
Target:  5'- aGGUGCGCggucaUGGAGuuGGCGcaGUCGUCgaucucgGGCa -3'
miRNA:   3'- -CCACGCG-----ACCUC--CCGC--CAGUAG-------CCGa -5'
15747 5' -60.7 NC_004065.1 + 167601 0.66 0.806246
Target:  5'- uGG-GUGCUGGcGGGGCugucguuaguguGGUCAgguacgggaugcucgUCGGCg -3'
miRNA:   3'- -CCaCGCGACC-UCCCG------------CCAGU---------------AGCCGa -5'
15747 5' -60.7 NC_004065.1 + 17995 0.66 0.802899
Target:  5'- gGGUGUcggggaGCUGGAGGGUGucguaGUCGUagaGGUc -3'
miRNA:   3'- -CCACG------CGACCUCCCGC-----CAGUAg--CCGa -5'
15747 5' -60.7 NC_004065.1 + 168628 0.66 0.802899
Target:  5'- --gGCGCUGGugccgcGGGCGGagcCGgcgCGGCg -3'
miRNA:   3'- ccaCGCGACCu-----CCCGCCa--GUa--GCCGa -5'
15747 5' -60.7 NC_004065.1 + 131642 0.66 0.802899
Target:  5'- -aUGCGCUGGAuGuGGCGGagcUgGUCGaGCa -3'
miRNA:   3'- ccACGCGACCU-C-CCGCC---AgUAGC-CGa -5'
15747 5' -60.7 NC_004065.1 + 159780 0.66 0.802899
Target:  5'- uGUGCGUc--AGGGCGGUCAggaGGUg -3'
miRNA:   3'- cCACGCGaccUCCCGCCAGUag-CCGa -5'
15747 5' -60.7 NC_004065.1 + 38909 0.66 0.78584
Target:  5'- aGGU-CGaCgacGGuAGGGCGGuuUCGUCGGCa -3'
miRNA:   3'- -CCAcGC-Ga--CC-UCCCGCC--AGUAGCCGa -5'
15747 5' -60.7 NC_004065.1 + 104756 0.67 0.777123
Target:  5'- gGGUGCauGUuuuucgguaUGGGGGGCGucacgaCAUCGGCUu -3'
miRNA:   3'- -CCACG--CG---------ACCUCCCGCca----GUAGCCGA- -5'
15747 5' -60.7 NC_004065.1 + 59958 0.67 0.777123
Target:  5'- uGGUGCccGCcaGGuuGGCGGcuUCGUCGGCc -3'
miRNA:   3'- -CCACG--CGa-CCucCCGCC--AGUAGCCGa -5'
15747 5' -60.7 NC_004065.1 + 38339 0.67 0.777123
Target:  5'- uGGUGgGCUGGGucaaauguucGGGCGGUCAa----- -3'
miRNA:   3'- -CCACgCGACCU----------CCCGCCAGUagccga -5'
15747 5' -60.7 NC_004065.1 + 130858 0.67 0.776244
Target:  5'- aGGUGCagcagcaGCUGGA-GGCGGcCA-CGGUg -3'
miRNA:   3'- -CCACG-------CGACCUcCCGCCaGUaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 224368 0.67 0.7674
Target:  5'- cGGUGUGCaGGAuguccauGuGGCGGcguucCGUCGGCg -3'
miRNA:   3'- -CCACGCGaCCU-------C-CCGCCa----GUAGCCGa -5'
15747 5' -60.7 NC_004065.1 + 83219 0.67 0.7674
Target:  5'- cGUGCGCgccgccgGGAGgagcauacugcacGGCGGUCugggUGGCg -3'
miRNA:   3'- cCACGCGa------CCUC-------------CCGCCAGua--GCCGa -5'
15747 5' -60.7 NC_004065.1 + 142482 0.67 0.759349
Target:  5'- cGGUGgaCGCgagccagGGGGuGGCGGUCugucgaCGGCUc -3'
miRNA:   3'- -CCAC--GCGa------CCUC-CCGCCAGua----GCCGA- -5'
15747 5' -60.7 NC_004065.1 + 141630 0.67 0.749399
Target:  5'- cGGUgGCgGCUcggcgacGGAGGGCGGUgG-CGGUg -3'
miRNA:   3'- -CCA-CG-CGA-------CCUCCCGCCAgUaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 32652 0.67 0.747578
Target:  5'- aGGUGUGCaGGAGGaguuccucgcgggcGCGGUUcUCGcGCa -3'
miRNA:   3'- -CCACGCGaCCUCC--------------CGCCAGuAGC-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.