Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15747 | 5' | -60.7 | NC_004065.1 | + | 155840 | 1.09 | 0.001818 |
Target: 5'- cGGUGCGCUGGAGGGCGGUCAUCGGCUc -3' miRNA: 3'- -CCACGCGACCUCCCGCCAGUAGCCGA- -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 176324 | 0.75 | 0.332619 |
Target: 5'- --gGgGgaGGAGGGCGGUCGggCGGCg -3' miRNA: 3'- ccaCgCgaCCUCCCGCCAGUa-GCCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 38215 | 0.72 | 0.477136 |
Target: 5'- cGUGCGgaGGAcGGGCGGggugugUAUCGGaCUg -3' miRNA: 3'- cCACGCgaCCU-CCCGCCa-----GUAGCC-GA- -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 136617 | 0.71 | 0.51333 |
Target: 5'- cGGgGCGCUGGuccgaGGcGGCGGUCcggagCGGCg -3' miRNA: 3'- -CCaCGCGACC-----UC-CCGCCAGua---GCCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 182476 | 0.71 | 0.530916 |
Target: 5'- gGGU-CGCUGGGuGGGCGGUgGUCccaauugGGCg -3' miRNA: 3'- -CCAcGCGACCU-CCCGCCAgUAG-------CCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 19566 | 0.7 | 0.560053 |
Target: 5'- gGGUGuCGgUGGc-GGCGGUagCGUCGGCUg -3' miRNA: 3'- -CCAC-GCgACCucCCGCCA--GUAGCCGA- -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 66106 | 0.7 | 0.579087 |
Target: 5'- --cGCGCUGGGGGGCGa-CAUCaccgaGGCg -3' miRNA: 3'- ccaCGCGACCUCCCGCcaGUAG-----CCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 196812 | 0.69 | 0.646456 |
Target: 5'- --gGCGgUGGGGGGUcguGGUCAccugCGGCa -3' miRNA: 3'- ccaCGCgACCUCCCG---CCAGUa---GCCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 79338 | 0.69 | 0.665711 |
Target: 5'- cGUGCGCgcggaggacGAGGGCGG-CG-CGGCg -3' miRNA: 3'- cCACGCGac-------CUCCCGCCaGUaGCCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 75886 | 0.68 | 0.675307 |
Target: 5'- --cGCGCaGGAGGGCcuGGUacUCGGCc -3' miRNA: 3'- ccaCGCGaCCUCCCG--CCAguAGCCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 98859 | 0.68 | 0.675307 |
Target: 5'- gGGUGCGCUgccGGAacGGG-GGUCGUCGucGCc -3' miRNA: 3'- -CCACGCGA---CCU--CCCgCCAGUAGC--CGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 127840 | 0.68 | 0.7133 |
Target: 5'- cGGcgGCGUUgcGGAGGuGCGGUCGacaUUGGUUa -3' miRNA: 3'- -CCa-CGCGA--CCUCC-CGCCAGU---AGCCGA- -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 114911 | 0.68 | 0.7133 |
Target: 5'- cGGUG-GCUccGGGGGGUGGgg--CGGCa -3' miRNA: 3'- -CCACgCGA--CCUCCCGCCaguaGCCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 197473 | 0.68 | 0.7133 |
Target: 5'- uGGUGgGgUGGGGGGgGGUgAUggugggggugUGGCUa -3' miRNA: 3'- -CCACgCgACCUCCCgCCAgUA----------GCCGA- -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 120548 | 0.67 | 0.741176 |
Target: 5'- cGGUGUGCcGGc-GGCGGUCGgcgCGaGCg -3' miRNA: 3'- -CCACGCGaCCucCCGCCAGUa--GC-CGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 32652 | 0.67 | 0.747578 |
Target: 5'- aGGUGUGCaGGAGGaguuccucgcgggcGCGGUUcUCGcGCa -3' miRNA: 3'- -CCACGCGaCCUCC--------------CGCCAGuAGC-CGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 141630 | 0.67 | 0.749399 |
Target: 5'- cGGUgGCgGCUcggcgacGGAGGGCGGUgG-CGGUg -3' miRNA: 3'- -CCA-CG-CGA-------CCUCCCGCCAgUaGCCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 142482 | 0.67 | 0.759349 |
Target: 5'- cGGUGgaCGCgagccagGGGGuGGCGGUCugucgaCGGCUc -3' miRNA: 3'- -CCAC--GCGa------CCUC-CCGCCAGua----GCCGA- -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 224368 | 0.67 | 0.7674 |
Target: 5'- cGGUGUGCaGGAuguccauGuGGCGGcguucCGUCGGCg -3' miRNA: 3'- -CCACGCGaCCU-------C-CCGCCa----GUAGCCGa -5' |
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15747 | 5' | -60.7 | NC_004065.1 | + | 83219 | 0.67 | 0.7674 |
Target: 5'- cGUGCGCgccgccgGGAGgagcauacugcacGGCGGUCugggUGGCg -3' miRNA: 3'- cCACGCGa------CCUC-------------CCGCCAGua--GCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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