miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15747 5' -60.7 NC_004065.1 + 120548 0.67 0.741176
Target:  5'- cGGUGUGCcGGc-GGCGGUCGgcgCGaGCg -3'
miRNA:   3'- -CCACGCGaCCucCCGCCAGUa--GC-CGa -5'
15747 5' -60.7 NC_004065.1 + 197473 0.68 0.7133
Target:  5'- uGGUGgGgUGGGGGGgGGUgAUggugggggugUGGCUa -3'
miRNA:   3'- -CCACgCgACCUCCCgCCAgUA----------GCCGA- -5'
15747 5' -60.7 NC_004065.1 + 127840 0.68 0.7133
Target:  5'- cGGcgGCGUUgcGGAGGuGCGGUCGacaUUGGUUa -3'
miRNA:   3'- -CCa-CGCGA--CCUCC-CGCCAGU---AGCCGA- -5'
15747 5' -60.7 NC_004065.1 + 114911 0.68 0.7133
Target:  5'- cGGUG-GCUccGGGGGGUGGgg--CGGCa -3'
miRNA:   3'- -CCACgCGA--CCUCCCGCCaguaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 75886 0.68 0.675307
Target:  5'- --cGCGCaGGAGGGCcuGGUacUCGGCc -3'
miRNA:   3'- ccaCGCGaCCUCCCG--CCAguAGCCGa -5'
15747 5' -60.7 NC_004065.1 + 98859 0.68 0.675307
Target:  5'- gGGUGCGCUgccGGAacGGG-GGUCGUCGucGCc -3'
miRNA:   3'- -CCACGCGA---CCU--CCCgCCAGUAGC--CGa -5'
15747 5' -60.7 NC_004065.1 + 79338 0.69 0.665711
Target:  5'- cGUGCGCgcggaggacGAGGGCGG-CG-CGGCg -3'
miRNA:   3'- cCACGCGac-------CUCCCGCCaGUaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 196812 0.69 0.646456
Target:  5'- --gGCGgUGGGGGGUcguGGUCAccugCGGCa -3'
miRNA:   3'- ccaCGCgACCUCCCG---CCAGUa---GCCGa -5'
15747 5' -60.7 NC_004065.1 + 66106 0.7 0.579087
Target:  5'- --cGCGCUGGGGGGCGa-CAUCaccgaGGCg -3'
miRNA:   3'- ccaCGCGACCUCCCGCcaGUAG-----CCGa -5'
15747 5' -60.7 NC_004065.1 + 19566 0.7 0.560053
Target:  5'- gGGUGuCGgUGGc-GGCGGUagCGUCGGCUg -3'
miRNA:   3'- -CCAC-GCgACCucCCGCCA--GUAGCCGA- -5'
15747 5' -60.7 NC_004065.1 + 182476 0.71 0.530916
Target:  5'- gGGU-CGCUGGGuGGGCGGUgGUCccaauugGGCg -3'
miRNA:   3'- -CCAcGCGACCU-CCCGCCAgUAG-------CCGa -5'
15747 5' -60.7 NC_004065.1 + 136617 0.71 0.51333
Target:  5'- cGGgGCGCUGGuccgaGGcGGCGGUCcggagCGGCg -3'
miRNA:   3'- -CCaCGCGACC-----UC-CCGCCAGua---GCCGa -5'
15747 5' -60.7 NC_004065.1 + 38215 0.72 0.477136
Target:  5'- cGUGCGgaGGAcGGGCGGggugugUAUCGGaCUg -3'
miRNA:   3'- cCACGCgaCCU-CCCGCCa-----GUAGCC-GA- -5'
15747 5' -60.7 NC_004065.1 + 176324 0.75 0.332619
Target:  5'- --gGgGgaGGAGGGCGGUCGggCGGCg -3'
miRNA:   3'- ccaCgCgaCCUCCCGCCAGUa-GCCGa -5'
15747 5' -60.7 NC_004065.1 + 155840 1.09 0.001818
Target:  5'- cGGUGCGCUGGAGGGCGGUCAUCGGCUc -3'
miRNA:   3'- -CCACGCGACCUCCCGCCAGUAGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.