miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15747 5' -60.7 NC_004065.1 + 38215 0.72 0.477136
Target:  5'- cGUGCGgaGGAcGGGCGGggugugUAUCGGaCUg -3'
miRNA:   3'- cCACGCgaCCU-CCCGCCa-----GUAGCC-GA- -5'
15747 5' -60.7 NC_004065.1 + 59958 0.67 0.777123
Target:  5'- uGGUGCccGCcaGGuuGGCGGcuUCGUCGGCc -3'
miRNA:   3'- -CCACG--CGa-CCucCCGCC--AGUAGCCGa -5'
15747 5' -60.7 NC_004065.1 + 104756 0.67 0.777123
Target:  5'- gGGUGCauGUuuuucgguaUGGGGGGCGucacgaCAUCGGCUu -3'
miRNA:   3'- -CCACG--CG---------ACCUCCCGCca----GUAGCCGA- -5'
15747 5' -60.7 NC_004065.1 + 17995 0.66 0.802899
Target:  5'- gGGUGUcggggaGCUGGAGGGUGucguaGUCGUagaGGUc -3'
miRNA:   3'- -CCACG------CGACCUCCCGC-----CAGUAg--CCGa -5'
15747 5' -60.7 NC_004065.1 + 168628 0.66 0.802899
Target:  5'- --gGCGCUGGugccgcGGGCGGagcCGgcgCGGCg -3'
miRNA:   3'- ccaCGCGACCu-----CCCGCCa--GUa--GCCGa -5'
15747 5' -60.7 NC_004065.1 + 131642 0.66 0.802899
Target:  5'- -aUGCGCUGGAuGuGGCGGagcUgGUCGaGCa -3'
miRNA:   3'- ccACGCGACCU-C-CCGCC---AgUAGC-CGa -5'
15747 5' -60.7 NC_004065.1 + 167601 0.66 0.806246
Target:  5'- uGG-GUGCUGGcGGGGCugucguuaguguGGUCAgguacgggaugcucgUCGGCg -3'
miRNA:   3'- -CCaCGCGACC-UCCCG------------CCAGU---------------AGCCGa -5'
15747 5' -60.7 NC_004065.1 + 62373 0.66 0.827439
Target:  5'- cGGUG-GCgGcGGGGGUGGUgG-CGGCg -3'
miRNA:   3'- -CCACgCGaC-CUCCCGCCAgUaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 200578 0.66 0.827439
Target:  5'- cGG-GUGgaGaAGGGUGGUCG-CGGCg -3'
miRNA:   3'- -CCaCGCgaCcUCCCGCCAGUaGCCGa -5'
15747 5' -60.7 NC_004065.1 + 224368 0.67 0.7674
Target:  5'- cGGUGUGCaGGAuguccauGuGGCGGcguucCGUCGGCg -3'
miRNA:   3'- -CCACGCGaCCU-------C-CCGCCa----GUAGCCGa -5'
15747 5' -60.7 NC_004065.1 + 83219 0.67 0.7674
Target:  5'- cGUGCGCgccgccgGGAGgagcauacugcacGGCGGUCugggUGGCg -3'
miRNA:   3'- cCACGCGa------CCUC-------------CCGCCAGua--GCCGa -5'
15747 5' -60.7 NC_004065.1 + 32652 0.67 0.747578
Target:  5'- aGGUGUGCaGGAGGaguuccucgcgggcGCGGUUcUCGcGCa -3'
miRNA:   3'- -CCACGCGaCCUCC--------------CGCCAGuAGC-CGa -5'
15747 5' -60.7 NC_004065.1 + 182476 0.71 0.530916
Target:  5'- gGGU-CGCUGGGuGGGCGGUgGUCccaauugGGCg -3'
miRNA:   3'- -CCAcGCGACCU-CCCGCCAgUAG-------CCGa -5'
15747 5' -60.7 NC_004065.1 + 19566 0.7 0.560053
Target:  5'- gGGUGuCGgUGGc-GGCGGUagCGUCGGCUg -3'
miRNA:   3'- -CCAC-GCgACCucCCGCCA--GUAGCCGA- -5'
15747 5' -60.7 NC_004065.1 + 66106 0.7 0.579087
Target:  5'- --cGCGCUGGGGGGCGa-CAUCaccgaGGCg -3'
miRNA:   3'- ccaCGCGACCUCCCGCcaGUAG-----CCGa -5'
15747 5' -60.7 NC_004065.1 + 196812 0.69 0.646456
Target:  5'- --gGCGgUGGGGGGUcguGGUCAccugCGGCa -3'
miRNA:   3'- ccaCGCgACCUCCCG---CCAGUa---GCCGa -5'
15747 5' -60.7 NC_004065.1 + 98859 0.68 0.675307
Target:  5'- gGGUGCGCUgccGGAacGGG-GGUCGUCGucGCc -3'
miRNA:   3'- -CCACGCGA---CCU--CCCgCCAGUAGC--CGa -5'
15747 5' -60.7 NC_004065.1 + 75886 0.68 0.675307
Target:  5'- --cGCGCaGGAGGGCcuGGUacUCGGCc -3'
miRNA:   3'- ccaCGCGaCCUCCCG--CCAguAGCCGa -5'
15747 5' -60.7 NC_004065.1 + 197473 0.68 0.7133
Target:  5'- uGGUGgGgUGGGGGGgGGUgAUggugggggugUGGCUa -3'
miRNA:   3'- -CCACgCgACCUCCCgCCAgUA----------GCCGA- -5'
15747 5' -60.7 NC_004065.1 + 120548 0.67 0.741176
Target:  5'- cGGUGUGCcGGc-GGCGGUCGgcgCGaGCg -3'
miRNA:   3'- -CCACGCGaCCucCCGCCAGUa--GC-CGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.