miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15748 3' -56.9 NC_004065.1 + 1182 0.66 0.943335
Target:  5'- ---cGUCGGCGCcGCuGCCGGGGuACu- -3'
miRNA:   3'- uucaCAGUCGCGaUG-CGGCUCC-UGcc -5'
15748 3' -56.9 NC_004065.1 + 123033 0.66 0.943335
Target:  5'- ---cGUCcgacGGCGCUGCGCCuuccgcucggGAGGACc- -3'
miRNA:   3'- uucaCAG----UCGCGAUGCGG----------CUCCUGcc -5'
15748 3' -56.9 NC_004065.1 + 141654 0.66 0.943335
Target:  5'- cGGUGgCGGUGCcGCgGCCGcGGACGa -3'
miRNA:   3'- uUCACaGUCGCGaUG-CGGCuCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 847 0.66 0.943335
Target:  5'- gAGGUGUUAcGCGgaGCGCaugacugccgggCGAGGGCGc -3'
miRNA:   3'- -UUCACAGU-CGCgaUGCG------------GCUCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 138235 0.66 0.943335
Target:  5'- --aUGUCgaGGCGCUcgccgcCGUCGAGGAgGGu -3'
miRNA:   3'- uucACAG--UCGCGAu-----GCGGCUCCUgCC- -5'
15748 3' -56.9 NC_004065.1 + 163485 0.66 0.943335
Target:  5'- ---cGUCGGCG--GCGCCGGuGGCGGc -3'
miRNA:   3'- uucaCAGUCGCgaUGCGGCUcCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 144064 0.66 0.943335
Target:  5'- ---aGUUGGC-CUuguggcGCGUCGAGGACGGc -3'
miRNA:   3'- uucaCAGUCGcGA------UGCGGCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 142773 0.66 0.942896
Target:  5'- ---cGaCGGCcuGCUgguggugGCGCCGGGGGCGGc -3'
miRNA:   3'- uucaCaGUCG--CGA-------UGCGGCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 68025 0.66 0.938843
Target:  5'- cGAGcgGUCGGuCGCUACGa-GGGGuCGGu -3'
miRNA:   3'- -UUCa-CAGUC-GCGAUGCggCUCCuGCC- -5'
15748 3' -56.9 NC_004065.1 + 138527 0.66 0.938843
Target:  5'- cGGGcUGUUGGCGCUcgaACGCggcaCGAGcGGCGGc -3'
miRNA:   3'- -UUC-ACAGUCGCGA---UGCG----GCUC-CUGCC- -5'
15748 3' -56.9 NC_004065.1 + 61082 0.66 0.937452
Target:  5'- -cGUGUCGgcGCGCUgcucugcgucgcguACGCCGu-GACGGc -3'
miRNA:   3'- uuCACAGU--CGCGA--------------UGCGGCucCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 66628 0.66 0.934129
Target:  5'- cGGGcUG-CGGCGCUGCGUgGcGGACGc -3'
miRNA:   3'- -UUC-ACaGUCGCGAUGCGgCuCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 113930 0.66 0.924029
Target:  5'- -cGUGUCgacgacgcGGCGCUcggGgGCUG-GGACGGa -3'
miRNA:   3'- uuCACAG--------UCGCGA---UgCGGCuCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 36173 0.66 0.918643
Target:  5'- -uGUGUCAGcCGCU-CGCgGgGGGGCGc -3'
miRNA:   3'- uuCACAGUC-GCGAuGCGgC-UCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 27634 0.66 0.918643
Target:  5'- gAAGgcgCuGCGCUGCGCgGGGGugcuGCGGc -3'
miRNA:   3'- -UUCacaGuCGCGAUGCGgCUCC----UGCC- -5'
15748 3' -56.9 NC_004065.1 + 35603 0.67 0.910727
Target:  5'- cGGUGUCGGUGCgggauccacggcgGCGgCGGcGGCGGg -3'
miRNA:   3'- uUCACAGUCGCGa------------UGCgGCUcCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 177195 0.67 0.907202
Target:  5'- ---cGUCGGCucucccCUACcggucacuuuuGCCGAGGGCGGg -3'
miRNA:   3'- uucaCAGUCGc-----GAUG-----------CGGCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 105914 0.67 0.907202
Target:  5'- cGGUGUCGauCGCgGCGCUGAgccGGAUGGg -3'
miRNA:   3'- uUCACAGUc-GCGaUGCGGCU---CCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 130364 0.67 0.90115
Target:  5'- --cUGUCGGCGCcGCGCCGccGGCu- -3'
miRNA:   3'- uucACAGUCGCGaUGCGGCucCUGcc -5'
15748 3' -56.9 NC_004065.1 + 117178 0.67 0.898668
Target:  5'- cGGG-GUCcgccccuggggcaGGCGUUGCGCCaggcaggugauggcGGGGACGGa -3'
miRNA:   3'- -UUCaCAG-------------UCGCGAUGCGG--------------CUCCUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.