miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15748 3' -56.9 NC_004065.1 + 155566 1.07 0.004969
Target:  5'- cAAGUGUCAGCGCUACGCCGAGGACGGc -3'
miRNA:   3'- -UUCACAGUCGCGAUGCGGCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 121883 0.78 0.360805
Target:  5'- uAAGUgGUUAGCGCUACGCU--GGGCGGg -3'
miRNA:   3'- -UUCA-CAGUCGCGAUGCGGcuCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 28861 0.77 0.376444
Target:  5'- uGGUGUCGGCGCUGCuGCgugaCGAGGACu- -3'
miRNA:   3'- uUCACAGUCGCGAUG-CG----GCUCCUGcc -5'
15748 3' -56.9 NC_004065.1 + 127630 0.72 0.633617
Target:  5'- -cGUG-CAccgcucGCGCUgccgcugcgGCGCCGAGGGCGGc -3'
miRNA:   3'- uuCACaGU------CGCGA---------UGCGGCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 30989 0.71 0.692779
Target:  5'- uGGUGUguGUG-UGCGCCGGGGugGc -3'
miRNA:   3'- uUCACAguCGCgAUGCGGCUCCugCc -5'
15748 3' -56.9 NC_004065.1 + 186537 0.71 0.692779
Target:  5'- cAAGUGauguaUCGGCG--GCGCCGAGGACa- -3'
miRNA:   3'- -UUCAC-----AGUCGCgaUGCGGCUCCUGcc -5'
15748 3' -56.9 NC_004065.1 + 196617 0.71 0.692779
Target:  5'- cGAGUGUCGGa--UGCGCCG-GGGCGa -3'
miRNA:   3'- -UUCACAGUCgcgAUGCGGCuCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 98182 0.71 0.740845
Target:  5'- --cUGUCGGCGC-ACGCCGAG-ACGc -3'
miRNA:   3'- uucACAGUCGCGaUGCGGCUCcUGCc -5'
15748 3' -56.9 NC_004065.1 + 194635 0.7 0.750225
Target:  5'- gGAGcUGUU-GCGCUGCGCC-AGGGCGu -3'
miRNA:   3'- -UUC-ACAGuCGCGAUGCGGcUCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 99540 0.69 0.795498
Target:  5'- ---gGUCGGCGCUcccgucuCGCCGcggcGGACGGc -3'
miRNA:   3'- uucaCAGUCGCGAu------GCGGCu---CCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 68228 0.69 0.812696
Target:  5'- cGG-GUgAGCGCgucgGCGgugaCGAGGACGGa -3'
miRNA:   3'- uUCaCAgUCGCGa---UGCg---GCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 187390 0.69 0.82928
Target:  5'- cAGcUGgcgcgCGGCGCggugugGCGUCGAGGGCGa -3'
miRNA:   3'- uUC-ACa----GUCGCGa-----UGCGGCUCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 102551 0.69 0.82928
Target:  5'- ---cGUCGGUG--GCGCCGGGGuCGGg -3'
miRNA:   3'- uucaCAGUCGCgaUGCGGCUCCuGCC- -5'
15748 3' -56.9 NC_004065.1 + 109784 0.69 0.837323
Target:  5'- cAGGgca-GGCGCUACGCCGcGGGCa- -3'
miRNA:   3'- -UUCacagUCGCGAUGCGGCuCCUGcc -5'
15748 3' -56.9 NC_004065.1 + 19475 0.69 0.837323
Target:  5'- cGGGaGUCGGUGgaGCGCCcaucgucgcgauGGGGACGGc -3'
miRNA:   3'- -UUCaCAGUCGCgaUGCGG------------CUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 72479 0.68 0.845192
Target:  5'- cGGUGUCGGCGCggcugaaGaCCGGGGAgaaGGu -3'
miRNA:   3'- uUCACAGUCGCGaug----C-GGCUCCUg--CC- -5'
15748 3' -56.9 NC_004065.1 + 30771 0.68 0.850592
Target:  5'- cGAG-GUCGGCGgacgcggACGCCGAcgaugacgacugacGGACGGa -3'
miRNA:   3'- -UUCaCAGUCGCga-----UGCGGCU--------------CCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 110949 0.68 0.852879
Target:  5'- -cGUgGUCAugccGCGCaccgUGCaGCUGAGGACGGg -3'
miRNA:   3'- uuCA-CAGU----CGCG----AUG-CGGCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 116310 0.68 0.860379
Target:  5'- gAGGUGUCGGCGUcgGCGgCGgcagcGGcGACGGc -3'
miRNA:   3'- -UUCACAGUCGCGa-UGCgGC-----UC-CUGCC- -5'
15748 3' -56.9 NC_004065.1 + 211740 0.68 0.863325
Target:  5'- -cGUGUCggcuuucguccuaucGGCGCUACuCCGAGcGACGc -3'
miRNA:   3'- uuCACAG---------------UCGCGAUGcGGCUC-CUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.