miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15748 3' -56.9 NC_004065.1 + 141709 0.67 0.89488
Target:  5'- --cUGUUuucaGGCGCgacgAgGCCGAGGACGu -3'
miRNA:   3'- uucACAG----UCGCGa---UgCGGCUCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 68794 0.67 0.89488
Target:  5'- -cGUGUCggagaacgugcgGGCGCUGCGC-GAGGuCGa -3'
miRNA:   3'- uuCACAG------------UCGCGAUGCGgCUCCuGCc -5'
15748 3' -56.9 NC_004065.1 + 41476 0.68 0.881017
Target:  5'- uGGUaagCAGCG-UGCGCCGgggcgucGGGACGGg -3'
miRNA:   3'- uUCAca-GUCGCgAUGCGGC-------UCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 27135 0.68 0.874793
Target:  5'- gAGGUGgaAGgGCUACGCgaGAGGcGCGGg -3'
miRNA:   3'- -UUCACagUCgCGAUGCGg-CUCC-UGCC- -5'
15748 3' -56.9 NC_004065.1 + 229569 0.68 0.874793
Target:  5'- cAGG-GUCcccGGaCGUUACGCCGcgAGGGCGGc -3'
miRNA:   3'- -UUCaCAG---UC-GCGAUGCGGC--UCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 102402 0.68 0.874793
Target:  5'- ----cUCAGCGCcuCGUCGAcGGACGGg -3'
miRNA:   3'- uucacAGUCGCGauGCGGCU-CCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 198372 0.68 0.867685
Target:  5'- cGGGUgGUCGGCGUcaACGCCGuGGGCc- -3'
miRNA:   3'- -UUCA-CAGUCGCGa-UGCGGCuCCUGcc -5'
15748 3' -56.9 NC_004065.1 + 211740 0.68 0.863325
Target:  5'- -cGUGUCggcuuucguccuaucGGCGCUACuCCGAGcGACGc -3'
miRNA:   3'- uuCACAG---------------UCGCGAUGcGGCUC-CUGCc -5'
15748 3' -56.9 NC_004065.1 + 116310 0.68 0.860379
Target:  5'- gAGGUGUCGGCGUcgGCGgCGgcagcGGcGACGGc -3'
miRNA:   3'- -UUCACAGUCGCGa-UGCgGC-----UC-CUGCC- -5'
15748 3' -56.9 NC_004065.1 + 110949 0.68 0.852879
Target:  5'- -cGUgGUCAugccGCGCaccgUGCaGCUGAGGACGGg -3'
miRNA:   3'- uuCA-CAGU----CGCG----AUG-CGGCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 30771 0.68 0.850592
Target:  5'- cGAG-GUCGGCGgacgcggACGCCGAcgaugacgacugacGGACGGa -3'
miRNA:   3'- -UUCaCAGUCGCga-----UGCGGCU--------------CCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 72479 0.68 0.845192
Target:  5'- cGGUGUCGGCGCggcugaaGaCCGGGGAgaaGGu -3'
miRNA:   3'- uUCACAGUCGCGaug----C-GGCUCCUg--CC- -5'
15748 3' -56.9 NC_004065.1 + 109784 0.69 0.837323
Target:  5'- cAGGgca-GGCGCUACGCCGcGGGCa- -3'
miRNA:   3'- -UUCacagUCGCGAUGCGGCuCCUGcc -5'
15748 3' -56.9 NC_004065.1 + 19475 0.69 0.837323
Target:  5'- cGGGaGUCGGUGgaGCGCCcaucgucgcgauGGGGACGGc -3'
miRNA:   3'- -UUCaCAGUCGCgaUGCGG------------CUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 102551 0.69 0.82928
Target:  5'- ---cGUCGGUG--GCGCCGGGGuCGGg -3'
miRNA:   3'- uucaCAGUCGCgaUGCGGCUCCuGCC- -5'
15748 3' -56.9 NC_004065.1 + 187390 0.69 0.82928
Target:  5'- cAGcUGgcgcgCGGCGCggugugGCGUCGAGGGCGa -3'
miRNA:   3'- uUC-ACa----GUCGCGa-----UGCGGCUCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 68228 0.69 0.812696
Target:  5'- cGG-GUgAGCGCgucgGCGgugaCGAGGACGGa -3'
miRNA:   3'- uUCaCAgUCGCGa---UGCg---GCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 99540 0.69 0.795498
Target:  5'- ---gGUCGGCGCUcccgucuCGCCGcggcGGACGGc -3'
miRNA:   3'- uucaCAGUCGCGAu------GCGGCu---CCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 194635 0.7 0.750225
Target:  5'- gGAGcUGUU-GCGCUGCGCC-AGGGCGu -3'
miRNA:   3'- -UUC-ACAGuCGCGAUGCGGcUCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 98182 0.71 0.740845
Target:  5'- --cUGUCGGCGC-ACGCCGAG-ACGc -3'
miRNA:   3'- uucACAGUCGCGaUGCGGCUCcUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.