miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15748 3' -56.9 NC_004065.1 + 847 0.66 0.943335
Target:  5'- gAGGUGUUAcGCGgaGCGCaugacugccgggCGAGGGCGc -3'
miRNA:   3'- -UUCACAGU-CGCgaUGCG------------GCUCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 1182 0.66 0.943335
Target:  5'- ---cGUCGGCGCcGCuGCCGGGGuACu- -3'
miRNA:   3'- uucaCAGUCGCGaUG-CGGCUCC-UGcc -5'
15748 3' -56.9 NC_004065.1 + 19475 0.69 0.837323
Target:  5'- cGGGaGUCGGUGgaGCGCCcaucgucgcgauGGGGACGGc -3'
miRNA:   3'- -UUCaCAGUCGCgaUGCGG------------CUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 27135 0.68 0.874793
Target:  5'- gAGGUGgaAGgGCUACGCgaGAGGcGCGGg -3'
miRNA:   3'- -UUCACagUCgCGAUGCGg-CUCC-UGCC- -5'
15748 3' -56.9 NC_004065.1 + 27634 0.66 0.918643
Target:  5'- gAAGgcgCuGCGCUGCGCgGGGGugcuGCGGc -3'
miRNA:   3'- -UUCacaGuCGCGAUGCGgCUCC----UGCC- -5'
15748 3' -56.9 NC_004065.1 + 28861 0.77 0.376444
Target:  5'- uGGUGUCGGCGCUGCuGCgugaCGAGGACu- -3'
miRNA:   3'- uUCACAGUCGCGAUG-CG----GCUCCUGcc -5'
15748 3' -56.9 NC_004065.1 + 30771 0.68 0.850592
Target:  5'- cGAG-GUCGGCGgacgcggACGCCGAcgaugacgacugacGGACGGa -3'
miRNA:   3'- -UUCaCAGUCGCga-----UGCGGCU--------------CCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 30989 0.71 0.692779
Target:  5'- uGGUGUguGUG-UGCGCCGGGGugGc -3'
miRNA:   3'- uUCACAguCGCgAUGCGGCUCCugCc -5'
15748 3' -56.9 NC_004065.1 + 35603 0.67 0.910727
Target:  5'- cGGUGUCGGUGCgggauccacggcgGCGgCGGcGGCGGg -3'
miRNA:   3'- uUCACAGUCGCGa------------UGCgGCUcCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 36173 0.66 0.918643
Target:  5'- -uGUGUCAGcCGCU-CGCgGgGGGGCGc -3'
miRNA:   3'- uuCACAGUC-GCGAuGCGgC-UCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 41476 0.68 0.881017
Target:  5'- uGGUaagCAGCG-UGCGCCGgggcgucGGGACGGg -3'
miRNA:   3'- uUCAca-GUCGCgAUGCGGC-------UCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 61082 0.66 0.937452
Target:  5'- -cGUGUCGgcGCGCUgcucugcgucgcguACGCCGu-GACGGc -3'
miRNA:   3'- uuCACAGU--CGCGA--------------UGCGGCucCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 66628 0.66 0.934129
Target:  5'- cGGGcUG-CGGCGCUGCGUgGcGGACGc -3'
miRNA:   3'- -UUC-ACaGUCGCGAUGCGgCuCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 68025 0.66 0.938843
Target:  5'- cGAGcgGUCGGuCGCUACGa-GGGGuCGGu -3'
miRNA:   3'- -UUCa-CAGUC-GCGAUGCggCUCCuGCC- -5'
15748 3' -56.9 NC_004065.1 + 68228 0.69 0.812696
Target:  5'- cGG-GUgAGCGCgucgGCGgugaCGAGGACGGa -3'
miRNA:   3'- uUCaCAgUCGCGa---UGCg---GCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 68794 0.67 0.89488
Target:  5'- -cGUGUCggagaacgugcgGGCGCUGCGC-GAGGuCGa -3'
miRNA:   3'- uuCACAG------------UCGCGAUGCGgCUCCuGCc -5'
15748 3' -56.9 NC_004065.1 + 72479 0.68 0.845192
Target:  5'- cGGUGUCGGCGCggcugaaGaCCGGGGAgaaGGu -3'
miRNA:   3'- uUCACAGUCGCGaug----C-GGCUCCUg--CC- -5'
15748 3' -56.9 NC_004065.1 + 98182 0.71 0.740845
Target:  5'- --cUGUCGGCGC-ACGCCGAG-ACGc -3'
miRNA:   3'- uucACAGUCGCGaUGCGGCUCcUGCc -5'
15748 3' -56.9 NC_004065.1 + 99540 0.69 0.795498
Target:  5'- ---gGUCGGCGCUcccgucuCGCCGcggcGGACGGc -3'
miRNA:   3'- uucaCAGUCGCGAu------GCGGCu---CCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 102402 0.68 0.874793
Target:  5'- ----cUCAGCGCcuCGUCGAcGGACGGg -3'
miRNA:   3'- uucacAGUCGCGauGCGGCU-CCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.