miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15748 3' -56.9 NC_004065.1 + 138235 0.66 0.943335
Target:  5'- --aUGUCgaGGCGCUcgccgcCGUCGAGGAgGGu -3'
miRNA:   3'- uucACAG--UCGCGAu-----GCGGCUCCUgCC- -5'
15748 3' -56.9 NC_004065.1 + 130364 0.67 0.90115
Target:  5'- --cUGUCGGCGCcGCGCCGccGGCu- -3'
miRNA:   3'- uucACAGUCGCGaUGCGGCucCUGcc -5'
15748 3' -56.9 NC_004065.1 + 35603 0.67 0.910727
Target:  5'- cGGUGUCGGUGCgggauccacggcgGCGgCGGcGGCGGg -3'
miRNA:   3'- uUCACAGUCGCGa------------UGCgGCUcCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 27634 0.66 0.918643
Target:  5'- gAAGgcgCuGCGCUGCGCgGGGGugcuGCGGc -3'
miRNA:   3'- -UUCacaGuCGCGAUGCGgCUCC----UGCC- -5'
15748 3' -56.9 NC_004065.1 + 113930 0.66 0.924029
Target:  5'- -cGUGUCgacgacgcGGCGCUcggGgGCUG-GGACGGa -3'
miRNA:   3'- uuCACAG--------UCGCGA---UgCGGCuCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 66628 0.66 0.934129
Target:  5'- cGGGcUG-CGGCGCUGCGUgGcGGACGc -3'
miRNA:   3'- -UUC-ACaGUCGCGAUGCGgCuCCUGCc -5'
15748 3' -56.9 NC_004065.1 + 138527 0.66 0.938843
Target:  5'- cGGGcUGUUGGCGCUcgaACGCggcaCGAGcGGCGGc -3'
miRNA:   3'- -UUC-ACAGUCGCGA---UGCG----GCUC-CUGCC- -5'
15748 3' -56.9 NC_004065.1 + 142773 0.66 0.942896
Target:  5'- ---cGaCGGCcuGCUgguggugGCGCCGGGGGCGGc -3'
miRNA:   3'- uucaCaGUCG--CGA-------UGCGGCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 123033 0.66 0.943335
Target:  5'- ---cGUCcgacGGCGCUGCGCCuuccgcucggGAGGACc- -3'
miRNA:   3'- uucaCAG----UCGCGAUGCGG----------CUCCUGcc -5'
15748 3' -56.9 NC_004065.1 + 117178 0.67 0.898668
Target:  5'- cGGG-GUCcgccccuggggcaGGCGUUGCGCCaggcaggugauggcGGGGACGGa -3'
miRNA:   3'- -UUCaCAG-------------UCGCGAUGCGG--------------CUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 68794 0.67 0.89488
Target:  5'- -cGUGUCggagaacgugcgGGCGCUGCGC-GAGGuCGa -3'
miRNA:   3'- uuCACAG------------UCGCGAUGCGgCUCCuGCc -5'
15748 3' -56.9 NC_004065.1 + 41476 0.68 0.881017
Target:  5'- uGGUaagCAGCG-UGCGCCGgggcgucGGGACGGg -3'
miRNA:   3'- uUCAca-GUCGCgAUGCGGC-------UCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 127630 0.72 0.633617
Target:  5'- -cGUG-CAccgcucGCGCUgccgcugcgGCGCCGAGGGCGGc -3'
miRNA:   3'- uuCACaGU------CGCGA---------UGCGGCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 99540 0.69 0.795498
Target:  5'- ---gGUCGGCGCUcccgucuCGCCGcggcGGACGGc -3'
miRNA:   3'- uucaCAGUCGCGAu------GCGGCu---CCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 68228 0.69 0.812696
Target:  5'- cGG-GUgAGCGCgucgGCGgugaCGAGGACGGa -3'
miRNA:   3'- uUCaCAgUCGCGa---UGCg---GCUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 19475 0.69 0.837323
Target:  5'- cGGGaGUCGGUGgaGCGCCcaucgucgcgauGGGGACGGc -3'
miRNA:   3'- -UUCaCAGUCGCgaUGCGG------------CUCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 109784 0.69 0.837323
Target:  5'- cAGGgca-GGCGCUACGCCGcGGGCa- -3'
miRNA:   3'- -UUCacagUCGCGAUGCGGCuCCUGcc -5'
15748 3' -56.9 NC_004065.1 + 72479 0.68 0.845192
Target:  5'- cGGUGUCGGCGCggcugaaGaCCGGGGAgaaGGu -3'
miRNA:   3'- uUCACAGUCGCGaug----C-GGCUCCUg--CC- -5'
15748 3' -56.9 NC_004065.1 + 229569 0.68 0.874793
Target:  5'- cAGG-GUCcccGGaCGUUACGCCGcgAGGGCGGc -3'
miRNA:   3'- -UUCaCAG---UC-GCGAUGCGGC--UCCUGCC- -5'
15748 3' -56.9 NC_004065.1 + 102402 0.68 0.874793
Target:  5'- ----cUCAGCGCcuCGUCGAcGGACGGg -3'
miRNA:   3'- uucacAGUCGCGauGCGGCU-CCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.