miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15748 5' -54.3 NC_004065.1 + 110685 0.66 0.982269
Target:  5'- aGGCCAUCguguCUCUG-GA--GCUGCccaGGGCg -3'
miRNA:   3'- -CCGGUAG----GAGACaCUguUGACG---CCUG- -5'
15748 5' -54.3 NC_004065.1 + 29762 0.66 0.980221
Target:  5'- cGGCUAUCCcgUCUGggaGACGuacgggggcGCUccgGCGGGCc -3'
miRNA:   3'- -CCGGUAGG--AGACa--CUGU---------UGA---CGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 172066 0.66 0.980221
Target:  5'- cGCgGUCCUCcGUGGCcGCcGCGGu- -3'
miRNA:   3'- cCGgUAGGAGaCACUGuUGaCGCCug -5'
15748 5' -54.3 NC_004065.1 + 166043 0.66 0.980221
Target:  5'- cGGaCCAg---CUGUGACGcCUGCGuGGCg -3'
miRNA:   3'- -CC-GGUaggaGACACUGUuGACGC-CUG- -5'
15748 5' -54.3 NC_004065.1 + 139238 0.66 0.978002
Target:  5'- cGCCgAUCUgCUG-GACAAcCUGCGGGa -3'
miRNA:   3'- cCGG-UAGGaGACaCUGUU-GACGCCUg -5'
15748 5' -54.3 NC_004065.1 + 169025 0.66 0.978002
Target:  5'- uGCaCAUCCUCg--GACAgcagugcaaggcGCUGCGGcCg -3'
miRNA:   3'- cCG-GUAGGAGacaCUGU------------UGACGCCuG- -5'
15748 5' -54.3 NC_004065.1 + 110082 0.66 0.978002
Target:  5'- cGGCCGUCCUCUGccu--GCUGUuccucuGGAa -3'
miRNA:   3'- -CCGGUAGGAGACacuguUGACG------CCUg -5'
15748 5' -54.3 NC_004065.1 + 151521 0.66 0.978002
Target:  5'- cGCCAUCCgcgccCUG-GACGGCgGCaaGGGCc -3'
miRNA:   3'- cCGGUAGGa----GACaCUGUUGaCG--CCUG- -5'
15748 5' -54.3 NC_004065.1 + 193787 0.66 0.975605
Target:  5'- aGCUcgCgCUCUGUGACAGaguuucugugaUGCGGcACg -3'
miRNA:   3'- cCGGuaG-GAGACACUGUUg----------ACGCC-UG- -5'
15748 5' -54.3 NC_004065.1 + 161666 0.66 0.975605
Target:  5'- cGGUCGUCgUCUGUucuccacgGGCAGCUGCu--- -3'
miRNA:   3'- -CCGGUAGgAGACA--------CUGUUGACGccug -5'
15748 5' -54.3 NC_004065.1 + 137548 0.66 0.975605
Target:  5'- cGGUCAgCCUCUGgcccGGCAcaucGCcGCGGAa -3'
miRNA:   3'- -CCGGUaGGAGACa---CUGU----UGaCGCCUg -5'
15748 5' -54.3 NC_004065.1 + 163317 0.66 0.975605
Target:  5'- cGCCAgCCUCU-UGACucuggugGCGGACg -3'
miRNA:   3'- cCGGUaGGAGAcACUGuuga---CGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 202570 0.66 0.975355
Target:  5'- cGGaCCGUCC-CcGUucgaccaggcgccGACAACUcGCGGGCg -3'
miRNA:   3'- -CC-GGUAGGaGaCA-------------CUGUUGA-CGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 26572 0.66 0.973022
Target:  5'- cGGCCGa----UGUGA-GACUGCGGGCg -3'
miRNA:   3'- -CCGGUaggagACACUgUUGACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 138009 0.66 0.973022
Target:  5'- cGCgGUCCUCU---GCGAUUGCGGcGCa -3'
miRNA:   3'- cCGgUAGGAGAcacUGUUGACGCC-UG- -5'
15748 5' -54.3 NC_004065.1 + 51904 0.67 0.970247
Target:  5'- cGCCggCUUCc-UGACGcugagACUGCGGACg -3'
miRNA:   3'- cCGGuaGGAGacACUGU-----UGACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 85540 0.67 0.964095
Target:  5'- cGCCGU-CUCUGUuu---CUGCGGACg -3'
miRNA:   3'- cCGGUAgGAGACAcuguuGACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 96786 0.67 0.964095
Target:  5'- cGGCCGUCUUC---GACGACUcuUGGACg -3'
miRNA:   3'- -CCGGUAGGAGacaCUGUUGAc-GCCUG- -5'
15748 5' -54.3 NC_004065.1 + 29894 0.67 0.960707
Target:  5'- gGGCCAgcUgCUCUGUcacCAGgaGCGGACc -3'
miRNA:   3'- -CCGGU--AgGAGACAcu-GUUgaCGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 196780 0.67 0.954837
Target:  5'- cGCCA-CCUCaGcGACGAacaccagacccucguCUGCGGACa -3'
miRNA:   3'- cCGGUaGGAGaCaCUGUU---------------GACGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.