miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15748 5' -54.3 NC_004065.1 + 155601 1.13 0.003547
Target:  5'- aGGCCAUCCUCUGUGACAACUGCGGACa -3'
miRNA:   3'- -CCGGUAGGAGACACUGUUGACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 138780 0.75 0.629556
Target:  5'- aGGCCGUgCUCUGgcuGCuguuCUGCGGACc -3'
miRNA:   3'- -CCGGUAgGAGACac-UGuu--GACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 192842 0.72 0.785911
Target:  5'- aGCCGcUCUCgGUGACGGCgGCGGAg -3'
miRNA:   3'- cCGGUaGGAGaCACUGUUGaCGCCUg -5'
15748 5' -54.3 NC_004065.1 + 27310 0.71 0.829388
Target:  5'- cGGCCGUCCUaccagGUGAagaGACgcGCGGAa -3'
miRNA:   3'- -CCGGUAGGAga---CACUg--UUGa-CGCCUg -5'
15748 5' -54.3 NC_004065.1 + 194383 0.7 0.867772
Target:  5'- cGGCCggucuucGUCC-CUGUGGgGACagagcgGCGGGCg -3'
miRNA:   3'- -CCGG-------UAGGaGACACUgUUGa-----CGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 175367 0.7 0.875731
Target:  5'- uGGUgGUCacgaaUCUGcGGCAGCagGCGGACg -3'
miRNA:   3'- -CCGgUAGg----AGACaCUGUUGa-CGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 102032 0.69 0.908591
Target:  5'- gGGCCA-CCUCgGUGACccgcGGCgGcCGGGCg -3'
miRNA:   3'- -CCGGUaGGAGaCACUG----UUGaC-GCCUG- -5'
15748 5' -54.3 NC_004065.1 + 2768 0.69 0.914485
Target:  5'- aGGCUGUgUCUCUG-GACGACUaaGGACa -3'
miRNA:   3'- -CCGGUA-GGAGACaCUGUUGAcgCCUG- -5'
15748 5' -54.3 NC_004065.1 + 28180 0.68 0.930773
Target:  5'- cGCCAucugUCCacguaccgcaacUCgGUGAUcgAGCUGCGGACg -3'
miRNA:   3'- cCGGU----AGG------------AGaCACUG--UUGACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 6064 0.68 0.940466
Target:  5'- cGGCCAUCCgUCcugGUGACccuGCcGCuGACg -3'
miRNA:   3'- -CCGGUAGG-AGa--CACUGu--UGaCGcCUG- -5'
15748 5' -54.3 NC_004065.1 + 168315 0.68 0.940466
Target:  5'- uGGCUcgcAUCCgccgCUacgccgcggacGUGACGcGCUGCGGACc -3'
miRNA:   3'- -CCGG---UAGGa---GA-----------CACUGU-UGACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 174271 0.68 0.940466
Target:  5'- cGCCAUCUUCcacucgGAUAGCaUGUGGACc -3'
miRNA:   3'- cCGGUAGGAGaca---CUGUUG-ACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 166529 0.68 0.940466
Target:  5'- aGGCCAUCCgcaccuggCUGcgcGACGGCgccugGCGGcuGCa -3'
miRNA:   3'- -CCGGUAGGa-------GACa--CUGUUGa----CGCC--UG- -5'
15748 5' -54.3 NC_004065.1 + 182783 0.68 0.944966
Target:  5'- cGCCGUCUucgaugucgUCUGUGACGACUucgacCGGGg -3'
miRNA:   3'- cCGGUAGG---------AGACACUGUUGAc----GCCUg -5'
15748 5' -54.3 NC_004065.1 + 132153 0.68 0.944966
Target:  5'- cGCCGagCCUggaCgugGUGGCGGCgaugGCGGACg -3'
miRNA:   3'- cCGGUa-GGA---Ga--CACUGUUGa---CGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 79612 0.68 0.944966
Target:  5'- aGGCCGgacCCgCUGcgcgcgcgGAC-GCUGCGGGCg -3'
miRNA:   3'- -CCGGUa--GGaGACa-------CUGuUGACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 196780 0.67 0.954837
Target:  5'- cGCCA-CCUCaGcGACGAacaccagacccucguCUGCGGACa -3'
miRNA:   3'- cCGGUaGGAGaCaCUGUU---------------GACGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 29894 0.67 0.960707
Target:  5'- gGGCCAgcUgCUCUGUcacCAGgaGCGGACc -3'
miRNA:   3'- -CCGGU--AgGAGACAcu-GUUgaCGCCUG- -5'
15748 5' -54.3 NC_004065.1 + 96786 0.67 0.964095
Target:  5'- cGGCCGUCUUC---GACGACUcuUGGACg -3'
miRNA:   3'- -CCGGUAGGAGacaCUGUUGAc-GCCUG- -5'
15748 5' -54.3 NC_004065.1 + 85540 0.67 0.964095
Target:  5'- cGCCGU-CUCUGUuu---CUGCGGACg -3'
miRNA:   3'- cCGGUAgGAGACAcuguuGACGCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.