Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15748 | 5' | -54.3 | NC_004065.1 | + | 2768 | 0.69 | 0.914485 |
Target: 5'- aGGCUGUgUCUCUG-GACGACUaaGGACa -3' miRNA: 3'- -CCGGUA-GGAGACaCUGUUGAcgCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 6064 | 0.68 | 0.940466 |
Target: 5'- cGGCCAUCCgUCcugGUGACccuGCcGCuGACg -3' miRNA: 3'- -CCGGUAGG-AGa--CACUGu--UGaCGcCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 26572 | 0.66 | 0.973022 |
Target: 5'- cGGCCGa----UGUGA-GACUGCGGGCg -3' miRNA: 3'- -CCGGUaggagACACUgUUGACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 27310 | 0.71 | 0.829388 |
Target: 5'- cGGCCGUCCUaccagGUGAagaGACgcGCGGAa -3' miRNA: 3'- -CCGGUAGGAga---CACUg--UUGa-CGCCUg -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 28180 | 0.68 | 0.930773 |
Target: 5'- cGCCAucugUCCacguaccgcaacUCgGUGAUcgAGCUGCGGACg -3' miRNA: 3'- cCGGU----AGG------------AGaCACUG--UUGACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 29762 | 0.66 | 0.980221 |
Target: 5'- cGGCUAUCCcgUCUGggaGACGuacgggggcGCUccgGCGGGCc -3' miRNA: 3'- -CCGGUAGG--AGACa--CUGU---------UGA---CGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 29894 | 0.67 | 0.960707 |
Target: 5'- gGGCCAgcUgCUCUGUcacCAGgaGCGGACc -3' miRNA: 3'- -CCGGU--AgGAGACAcu-GUUgaCGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 51904 | 0.67 | 0.970247 |
Target: 5'- cGCCggCUUCc-UGACGcugagACUGCGGACg -3' miRNA: 3'- cCGGuaGGAGacACUGU-----UGACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 79612 | 0.68 | 0.944966 |
Target: 5'- aGGCCGgacCCgCUGcgcgcgcgGAC-GCUGCGGGCg -3' miRNA: 3'- -CCGGUa--GGaGACa-------CUGuUGACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 85540 | 0.67 | 0.964095 |
Target: 5'- cGCCGU-CUCUGUuu---CUGCGGACg -3' miRNA: 3'- cCGGUAgGAGACAcuguuGACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 96786 | 0.67 | 0.964095 |
Target: 5'- cGGCCGUCUUC---GACGACUcuUGGACg -3' miRNA: 3'- -CCGGUAGGAGacaCUGUUGAc-GCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 102032 | 0.69 | 0.908591 |
Target: 5'- gGGCCA-CCUCgGUGACccgcGGCgGcCGGGCg -3' miRNA: 3'- -CCGGUaGGAGaCACUG----UUGaC-GCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 110082 | 0.66 | 0.978002 |
Target: 5'- cGGCCGUCCUCUGccu--GCUGUuccucuGGAa -3' miRNA: 3'- -CCGGUAGGAGACacuguUGACG------CCUg -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 110685 | 0.66 | 0.982269 |
Target: 5'- aGGCCAUCguguCUCUG-GA--GCUGCccaGGGCg -3' miRNA: 3'- -CCGGUAG----GAGACaCUguUGACG---CCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 132153 | 0.68 | 0.944966 |
Target: 5'- cGCCGagCCUggaCgugGUGGCGGCgaugGCGGACg -3' miRNA: 3'- cCGGUa-GGA---Ga--CACUGUUGa---CGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 137548 | 0.66 | 0.975605 |
Target: 5'- cGGUCAgCCUCUGgcccGGCAcaucGCcGCGGAa -3' miRNA: 3'- -CCGGUaGGAGACa---CUGU----UGaCGCCUg -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 138009 | 0.66 | 0.973022 |
Target: 5'- cGCgGUCCUCU---GCGAUUGCGGcGCa -3' miRNA: 3'- cCGgUAGGAGAcacUGUUGACGCC-UG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 138780 | 0.75 | 0.629556 |
Target: 5'- aGGCCGUgCUCUGgcuGCuguuCUGCGGACc -3' miRNA: 3'- -CCGGUAgGAGACac-UGuu--GACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 139238 | 0.66 | 0.978002 |
Target: 5'- cGCCgAUCUgCUG-GACAAcCUGCGGGa -3' miRNA: 3'- cCGG-UAGGaGACaCUGUU-GACGCCUg -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 151521 | 0.66 | 0.978002 |
Target: 5'- cGCCAUCCgcgccCUG-GACGGCgGCaaGGGCc -3' miRNA: 3'- cCGGUAGGa----GACaCUGUUGaCG--CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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