Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15748 | 5' | -54.3 | NC_004065.1 | + | 138780 | 0.75 | 0.629556 |
Target: 5'- aGGCCGUgCUCUGgcuGCuguuCUGCGGACc -3' miRNA: 3'- -CCGGUAgGAGACac-UGuu--GACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 172066 | 0.66 | 0.980221 |
Target: 5'- cGCgGUCCUCcGUGGCcGCcGCGGu- -3' miRNA: 3'- cCGgUAGGAGaCACUGuUGaCGCCug -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 166043 | 0.66 | 0.980221 |
Target: 5'- cGGaCCAg---CUGUGACGcCUGCGuGGCg -3' miRNA: 3'- -CC-GGUaggaGACACUGUuGACGC-CUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 110082 | 0.66 | 0.978002 |
Target: 5'- cGGCCGUCCUCUGccu--GCUGUuccucuGGAa -3' miRNA: 3'- -CCGGUAGGAGACacuguUGACG------CCUg -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 151521 | 0.66 | 0.978002 |
Target: 5'- cGCCAUCCgcgccCUG-GACGGCgGCaaGGGCc -3' miRNA: 3'- cCGGUAGGa----GACaCUGUUGaCG--CCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 163317 | 0.66 | 0.975605 |
Target: 5'- cGCCAgCCUCU-UGACucuggugGCGGACg -3' miRNA: 3'- cCGGUaGGAGAcACUGuuga---CGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 193787 | 0.66 | 0.975605 |
Target: 5'- aGCUcgCgCUCUGUGACAGaguuucugugaUGCGGcACg -3' miRNA: 3'- cCGGuaG-GAGACACUGUUg----------ACGCC-UG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 202570 | 0.66 | 0.975355 |
Target: 5'- cGGaCCGUCC-CcGUucgaccaggcgccGACAACUcGCGGGCg -3' miRNA: 3'- -CC-GGUAGGaGaCA-------------CUGUUGA-CGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 26572 | 0.66 | 0.973022 |
Target: 5'- cGGCCGa----UGUGA-GACUGCGGGCg -3' miRNA: 3'- -CCGGUaggagACACUgUUGACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 51904 | 0.67 | 0.970247 |
Target: 5'- cGCCggCUUCc-UGACGcugagACUGCGGACg -3' miRNA: 3'- cCGGuaGGAGacACUGU-----UGACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 96786 | 0.67 | 0.964095 |
Target: 5'- cGGCCGUCUUC---GACGACUcuUGGACg -3' miRNA: 3'- -CCGGUAGGAGacaCUGUUGAc-GCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 85540 | 0.67 | 0.964095 |
Target: 5'- cGCCGU-CUCUGUuu---CUGCGGACg -3' miRNA: 3'- cCGGUAgGAGACAcuguuGACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 2768 | 0.69 | 0.914485 |
Target: 5'- aGGCUGUgUCUCUG-GACGACUaaGGACa -3' miRNA: 3'- -CCGGUA-GGAGACaCUGUUGAcgCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 194383 | 0.7 | 0.867772 |
Target: 5'- cGGCCggucuucGUCC-CUGUGGgGACagagcgGCGGGCg -3' miRNA: 3'- -CCGG-------UAGGaGACACUgUUGa-----CGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 28180 | 0.68 | 0.930773 |
Target: 5'- cGCCAucugUCCacguaccgcaacUCgGUGAUcgAGCUGCGGACg -3' miRNA: 3'- cCGGU----AGG------------AGaCACUG--UUGACGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 102032 | 0.69 | 0.908591 |
Target: 5'- gGGCCA-CCUCgGUGACccgcGGCgGcCGGGCg -3' miRNA: 3'- -CCGGUaGGAGaCACUG----UUGaC-GCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 175367 | 0.7 | 0.875731 |
Target: 5'- uGGUgGUCacgaaUCUGcGGCAGCagGCGGACg -3' miRNA: 3'- -CCGgUAGg----AGACaCUGUUGa-CGCCUG- -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 27310 | 0.71 | 0.829388 |
Target: 5'- cGGCCGUCCUaccagGUGAagaGACgcGCGGAa -3' miRNA: 3'- -CCGGUAGGAga---CACUg--UUGa-CGCCUg -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 192842 | 0.72 | 0.785911 |
Target: 5'- aGCCGcUCUCgGUGACGGCgGCGGAg -3' miRNA: 3'- cCGGUaGGAGaCACUGUUGaCGCCUg -5' |
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15748 | 5' | -54.3 | NC_004065.1 | + | 110685 | 0.66 | 0.982269 |
Target: 5'- aGGCCAUCguguCUCUG-GA--GCUGCccaGGGCg -3' miRNA: 3'- -CCGGUAG----GAGACaCUguUGACG---CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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