Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15749 | 3' | -58.7 | NC_004065.1 | + | 155001 | 1.1 | 0.002536 |
Target: 5'- gCCGCUCCAAGGUCGACGCCCUGGUCGa -3' miRNA: 3'- -GGCGAGGUUCCAGCUGCGGGACCAGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 98989 | 0.73 | 0.544938 |
Target: 5'- cCUGCUCCAcaGGGUCGcccacacguucCGCCgCUGGUCu -3' miRNA: 3'- -GGCGAGGU--UCCAGCu----------GCGG-GACCAGc -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 103326 | 0.73 | 0.554349 |
Target: 5'- gCCGCaggCguAGGUCGAaguacguguCGCCCUGGUgCGg -3' miRNA: 3'- -GGCGa--GguUCCAGCU---------GCGGGACCA-GC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 88285 | 0.71 | 0.640522 |
Target: 5'- aCGCUCCGAaaacGGUCGggaGCGUCCUuGUCGc -3' miRNA: 3'- gGCGAGGUU----CCAGC---UGCGGGAcCAGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 161418 | 0.71 | 0.669368 |
Target: 5'- cUCGCugUCCAGGugcgacguGUCGGCGCUCUGGaUCGc -3' miRNA: 3'- -GGCG--AGGUUC--------CAGCUGCGGGACC-AGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 160595 | 0.71 | 0.669368 |
Target: 5'- uCCGUcgagUCCAgcAGGUCGGCGCgcaCCUGG-CGc -3' miRNA: 3'- -GGCG----AGGU--UCCAGCUGCG---GGACCaGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 82605 | 0.7 | 0.697972 |
Target: 5'- -aGCaCC-AGGUUGACGaCCUGGUCGu -3' miRNA: 3'- ggCGaGGuUCCAGCUGCgGGACCAGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 30280 | 0.69 | 0.75365 |
Target: 5'- gCaCUUCGGGGUCGugGgCCUgcgGGUCGg -3' miRNA: 3'- gGcGAGGUUCCAGCugC-GGGa--CCAGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 80996 | 0.69 | 0.75365 |
Target: 5'- cCCGCUcCCGAGGUCa--GCCCgaGGUUc -3' miRNA: 3'- -GGCGA-GGUUCCAGcugCGGGa-CCAGc -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 678 | 0.69 | 0.75365 |
Target: 5'- cCCGCUCgcuGGUCGAgcgacCGCCCgGGUUu -3' miRNA: 3'- -GGCGAGguuCCAGCU-----GCGGGaCCAGc -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 100693 | 0.69 | 0.75365 |
Target: 5'- cCCGCUCgGAucGGaUGACcCCCUGGUCc -3' miRNA: 3'- -GGCGAGgUU--CCaGCUGcGGGACCAGc -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 94485 | 0.69 | 0.788974 |
Target: 5'- uCCGCccgUCCGAcGUCGACGUCgacGGUCGa -3' miRNA: 3'- -GGCG---AGGUUcCAGCUGCGGga-CCAGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 32840 | 0.69 | 0.788974 |
Target: 5'- aCCGCcaCCAgucgaaccgcGGGgagcUGGCGuCCCUGGUCGa -3' miRNA: 3'- -GGCGa-GGU----------UCCa---GCUGC-GGGACCAGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 229258 | 0.69 | 0.792404 |
Target: 5'- aCGCUCgAAGGUCGAgCGCgaaCCcgcgacgcggcacgcUGGUCGc -3' miRNA: 3'- gGCGAGgUUCCAGCU-GCG---GG---------------ACCAGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 123557 | 0.68 | 0.79751 |
Target: 5'- gCCGCgUCCucgucguacGGGUCGACGCCCagcaUCGa -3' miRNA: 3'- -GGCG-AGGu--------UCCAGCUGCGGGacc-AGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 195335 | 0.68 | 0.79751 |
Target: 5'- gUGCUCCuGGG-CGGCGCCC-GcGUCu -3' miRNA: 3'- gGCGAGGuUCCaGCUGCGGGaC-CAGc -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 225076 | 0.68 | 0.813358 |
Target: 5'- gCCGCUCCAGgagaacuGGaUC-ACGUUCUGGUCu -3' miRNA: 3'- -GGCGAGGUU-------CC-AGcUGCGGGACCAGc -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 195847 | 0.68 | 0.825501 |
Target: 5'- cCCGUccgagucuUCCGAGGUCGAcgacaCGCaguucgucuuugaaCUGGUCGu -3' miRNA: 3'- -GGCG--------AGGUUCCAGCU-----GCGg-------------GACCAGC- -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 225583 | 0.68 | 0.830261 |
Target: 5'- cCCGCgaCGAGcUCGAgGCCCgagGGUCa -3' miRNA: 3'- -GGCGagGUUCcAGCUgCGGGa--CCAGc -5' |
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15749 | 3' | -58.7 | NC_004065.1 | + | 46270 | 0.68 | 0.830261 |
Target: 5'- cCCGUUCgAccuGGUCGAgGCCgUGGgCGa -3' miRNA: 3'- -GGCGAGgUu--CCAGCUgCGGgACCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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