miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15749 3' -58.7 NC_004065.1 + 678 0.69 0.75365
Target:  5'- cCCGCUCgcuGGUCGAgcgacCGCCCgGGUUu -3'
miRNA:   3'- -GGCGAGguuCCAGCU-----GCGGGaCCAGc -5'
15749 3' -58.7 NC_004065.1 + 27436 0.66 0.906123
Target:  5'- uCCGCcCgCGAGuuGUCgGACG-CCUGGUCGa -3'
miRNA:   3'- -GGCGaG-GUUC--CAG-CUGCgGGACCAGC- -5'
15749 3' -58.7 NC_004065.1 + 30280 0.69 0.75365
Target:  5'- gCaCUUCGGGGUCGugGgCCUgcgGGUCGg -3'
miRNA:   3'- gGcGAGGUUCCAGCugC-GGGa--CCAGC- -5'
15749 3' -58.7 NC_004065.1 + 32268 0.66 0.906123
Target:  5'- aCgGCUCCGAGugcccgcuGUCcGCGUCCUcGGUCu -3'
miRNA:   3'- -GgCGAGGUUC--------CAGcUGCGGGA-CCAGc -5'
15749 3' -58.7 NC_004065.1 + 32840 0.69 0.788974
Target:  5'- aCCGCcaCCAgucgaaccgcGGGgagcUGGCGuCCCUGGUCGa -3'
miRNA:   3'- -GGCGa-GGU----------UCCa---GCUGC-GGGACCAGC- -5'
15749 3' -58.7 NC_004065.1 + 35437 0.66 0.911836
Target:  5'- uUCGuCUUCGAGGUguccacCGuCGUgCUGGUCGg -3'
miRNA:   3'- -GGC-GAGGUUCCA------GCuGCGgGACCAGC- -5'
15749 3' -58.7 NC_004065.1 + 46270 0.68 0.830261
Target:  5'- cCCGUUCgAccuGGUCGAgGCCgUGGgCGa -3'
miRNA:   3'- -GGCGAGgUu--CCAGCUgCGGgACCaGC- -5'
15749 3' -58.7 NC_004065.1 + 74799 0.67 0.85095
Target:  5'- gCGCUCgcgcaagaugcugaCGAGcGUggaGACGCCCgGGUCGg -3'
miRNA:   3'- gGCGAG--------------GUUC-CAg--CUGCGGGaCCAGC- -5'
15749 3' -58.7 NC_004065.1 + 80996 0.69 0.75365
Target:  5'- cCCGCUcCCGAGGUCa--GCCCgaGGUUc -3'
miRNA:   3'- -GGCGA-GGUUCCAGcugCGGGa-CCAGc -5'
15749 3' -58.7 NC_004065.1 + 82605 0.7 0.697972
Target:  5'- -aGCaCC-AGGUUGACGaCCUGGUCGu -3'
miRNA:   3'- ggCGaGGuUCCAGCUGCgGGACCAGC- -5'
15749 3' -58.7 NC_004065.1 + 84685 0.66 0.906123
Target:  5'- -gGCagCCGAGaugaGGCGCCCUGuGUCGa -3'
miRNA:   3'- ggCGa-GGUUCcag-CUGCGGGAC-CAGC- -5'
15749 3' -58.7 NC_004065.1 + 88285 0.71 0.640522
Target:  5'- aCGCUCCGAaaacGGUCGggaGCGUCCUuGUCGc -3'
miRNA:   3'- gGCGAGGUU----CCAGC---UGCGGGAcCAGC- -5'
15749 3' -58.7 NC_004065.1 + 88708 0.66 0.887744
Target:  5'- gCGCUCUuGGG-CaGCGCCCUgacGGUCu -3'
miRNA:   3'- gGCGAGGuUCCaGcUGCGGGA---CCAGc -5'
15749 3' -58.7 NC_004065.1 + 94485 0.69 0.788974
Target:  5'- uCCGCccgUCCGAcGUCGACGUCgacGGUCGa -3'
miRNA:   3'- -GGCG---AGGUUcCAGCUGCGGga-CCAGC- -5'
15749 3' -58.7 NC_004065.1 + 98989 0.73 0.544938
Target:  5'- cCUGCUCCAcaGGGUCGcccacacguucCGCCgCUGGUCu -3'
miRNA:   3'- -GGCGAGGU--UCCAGCu----------GCGG-GACCAGc -5'
15749 3' -58.7 NC_004065.1 + 100500 0.67 0.881213
Target:  5'- aCGCggugCAGGGuguagUCGACGCagagCUGGUCGa -3'
miRNA:   3'- gGCGag--GUUCC-----AGCUGCGg---GACCAGC- -5'
15749 3' -58.7 NC_004065.1 + 100693 0.69 0.75365
Target:  5'- cCCGCUCgGAucGGaUGACcCCCUGGUCc -3'
miRNA:   3'- -GGCGAGgUU--CCaGCUGcGGGACCAGc -5'
15749 3' -58.7 NC_004065.1 + 101897 0.66 0.902595
Target:  5'- gCgGCUCCuccgagcugcuggagGAGGaugcUCGAuuuCGCCCUGuGUCGa -3'
miRNA:   3'- -GgCGAGG---------------UUCC----AGCU---GCGGGAC-CAGC- -5'
15749 3' -58.7 NC_004065.1 + 103326 0.73 0.554349
Target:  5'- gCCGCaggCguAGGUCGAaguacguguCGCCCUGGUgCGg -3'
miRNA:   3'- -GGCGa--GguUCCAGCU---------GCGGGACCA-GC- -5'
15749 3' -58.7 NC_004065.1 + 115045 0.66 0.892196
Target:  5'- gCCGCcagggCCGAGGgcaaCGGCGCgcgcgaggacgcggCCUcGGUCGg -3'
miRNA:   3'- -GGCGa----GGUUCCa---GCUGCG--------------GGA-CCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.