Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
15749 | 5' | -60 | NC_004065.1 | + | 205507 | 0.66 | 0.833231 |
Target: 5'- cGCUGCCgccgccaucuuGGGGCCggCGCUcagGGCCgGCGg -3' miRNA: 3'- uCGAUGG-----------UCCCGGa-GUGG---CUGGaCGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 149231 | 0.66 | 0.833231 |
Target: 5'- cGCUGCCGccGCCgccgcCGCCGucGCCUGCu -3' miRNA: 3'- uCGAUGGUccCGGa----GUGGC--UGGACGu -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 187181 | 0.66 | 0.833231 |
Target: 5'- cGCUcuCCgaGGGGUCUCgACCGACCcuccGCAc -3' miRNA: 3'- uCGAu-GG--UCCCGGAG-UGGCUGGa---CGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 124480 | 0.66 | 0.833231 |
Target: 5'- cGCUGcgccggguCCAGGGCCgCGCgGAUCUccaGCAu -3' miRNA: 3'- uCGAU--------GGUCCCGGaGUGgCUGGA---CGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 142942 | 0.66 | 0.825181 |
Target: 5'- cGGC-ACCAGGGCCagcUGCCcACCUcGCGc -3' miRNA: 3'- -UCGaUGGUCCCGGa--GUGGcUGGA-CGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 140654 | 0.66 | 0.825181 |
Target: 5'- cGCUGCCAcgagaaGCuCUUcCCGGCCUGCGg -3' miRNA: 3'- uCGAUGGUcc----CG-GAGuGGCUGGACGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 57694 | 0.66 | 0.81697 |
Target: 5'- aGGUg---AGGGCCgCGCUGAUCUGCAc -3' miRNA: 3'- -UCGauggUCCCGGaGUGGCUGGACGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 80377 | 0.66 | 0.808605 |
Target: 5'- cGCUGCggcgcgugCAGGGCCU-GCCGACg-GCGc -3' miRNA: 3'- uCGAUG--------GUCCCGGAgUGGCUGgaCGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 138972 | 0.66 | 0.808605 |
Target: 5'- uGCgagACCAGucGCCUCAUCGAggccggUCUGCAg -3' miRNA: 3'- uCGa--UGGUCc-CGGAGUGGCU------GGACGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 220793 | 0.66 | 0.800092 |
Target: 5'- cGUUAUCGauuucgaguuGGGUaguaUCAUCGACCUGCGg -3' miRNA: 3'- uCGAUGGU----------CCCGg---AGUGGCUGGACGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 139896 | 0.66 | 0.800092 |
Target: 5'- aGGUgGCCgcGGGGCCUCcgGCCGGCg-GCGc -3' miRNA: 3'- -UCGaUGG--UCCCGGAG--UGGCUGgaCGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 101286 | 0.66 | 0.800092 |
Target: 5'- cGCUGCCGacGGcuGCCUCGgCGGCCaGCc -3' miRNA: 3'- uCGAUGGU--CC--CGGAGUgGCUGGaCGu -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 196376 | 0.66 | 0.79144 |
Target: 5'- cGCUAUCuccgccGGCucgucaacgagCUCAUCGACCUGCAc -3' miRNA: 3'- uCGAUGGuc----CCG-----------GAGUGGCUGGACGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 114677 | 0.67 | 0.782656 |
Target: 5'- cGCUAUC-GGGCCgaUCGCCcGCCUcaGCAg -3' miRNA: 3'- uCGAUGGuCCCGG--AGUGGcUGGA--CGU- -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 153388 | 0.67 | 0.782656 |
Target: 5'- uGCUGCCuAGGGUCUacgaACUGACgUUGCc -3' miRNA: 3'- uCGAUGG-UCCCGGAg---UGGCUG-GACGu -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 206423 | 0.67 | 0.782656 |
Target: 5'- cGcCUGCCc--GCCUCACCG-CCUGCc -3' miRNA: 3'- uC-GAUGGuccCGGAGUGGCuGGACGu -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 199918 | 0.67 | 0.777325 |
Target: 5'- aGGCcGCCGGGGCUgcagcucucgcuacCGCUGGCCUcGCu -3' miRNA: 3'- -UCGaUGGUCCCGGa-------------GUGGCUGGA-CGu -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 129898 | 0.67 | 0.773747 |
Target: 5'- cGGCggacccugAUCGGGGCCUgGCgGcACCUGUu -3' miRNA: 3'- -UCGa-------UGGUCCCGGAgUGgC-UGGACGu -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 141063 | 0.67 | 0.773747 |
Target: 5'- -aCUACCGGGGCUggcacuaCGCgGGCCUGg- -3' miRNA: 3'- ucGAUGGUCCCGGa------GUGgCUGGACgu -5' |
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15749 | 5' | -60 | NC_004065.1 | + | 61440 | 0.67 | 0.773747 |
Target: 5'- -cCUAcCCAGGGCCggcCCGACCcGCu -3' miRNA: 3'- ucGAU-GGUCCCGGaguGGCUGGaCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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