miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15749 5' -60 NC_004065.1 + 140654 0.66 0.825181
Target:  5'- cGCUGCCAcgagaaGCuCUUcCCGGCCUGCGg -3'
miRNA:   3'- uCGAUGGUcc----CG-GAGuGGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 57694 0.66 0.81697
Target:  5'- aGGUg---AGGGCCgCGCUGAUCUGCAc -3'
miRNA:   3'- -UCGauggUCCCGGaGUGGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 205507 0.66 0.833231
Target:  5'- cGCUGCCgccgccaucuuGGGGCCggCGCUcagGGCCgGCGg -3'
miRNA:   3'- uCGAUGG-----------UCCCGGa-GUGG---CUGGaCGU- -5'
15749 5' -60 NC_004065.1 + 149231 0.66 0.833231
Target:  5'- cGCUGCCGccGCCgccgcCGCCGucGCCUGCu -3'
miRNA:   3'- uCGAUGGUccCGGa----GUGGC--UGGACGu -5'
15749 5' -60 NC_004065.1 + 124480 0.66 0.833231
Target:  5'- cGCUGcgccggguCCAGGGCCgCGCgGAUCUccaGCAu -3'
miRNA:   3'- uCGAU--------GGUCCCGGaGUGgCUGGA---CGU- -5'
15749 5' -60 NC_004065.1 + 142942 0.66 0.825181
Target:  5'- cGGC-ACCAGGGCCagcUGCCcACCUcGCGc -3'
miRNA:   3'- -UCGaUGGUCCCGGa--GUGGcUGGA-CGU- -5'
15749 5' -60 NC_004065.1 + 196376 0.66 0.79144
Target:  5'- cGCUAUCuccgccGGCucgucaacgagCUCAUCGACCUGCAc -3'
miRNA:   3'- uCGAUGGuc----CCG-----------GAGUGGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 101286 0.66 0.800092
Target:  5'- cGCUGCCGacGGcuGCCUCGgCGGCCaGCc -3'
miRNA:   3'- uCGAUGGU--CC--CGGAGUgGCUGGaCGu -5'
15749 5' -60 NC_004065.1 + 187181 0.66 0.833231
Target:  5'- cGCUcuCCgaGGGGUCUCgACCGACCcuccGCAc -3'
miRNA:   3'- uCGAu-GG--UCCCGGAG-UGGCUGGa---CGU- -5'
15749 5' -60 NC_004065.1 + 80377 0.66 0.808605
Target:  5'- cGCUGCggcgcgugCAGGGCCU-GCCGACg-GCGc -3'
miRNA:   3'- uCGAUG--------GUCCCGGAgUGGCUGgaCGU- -5'
15749 5' -60 NC_004065.1 + 138972 0.66 0.808605
Target:  5'- uGCgagACCAGucGCCUCAUCGAggccggUCUGCAg -3'
miRNA:   3'- uCGa--UGGUCc-CGGAGUGGCU------GGACGU- -5'
15749 5' -60 NC_004065.1 + 220793 0.66 0.800092
Target:  5'- cGUUAUCGauuucgaguuGGGUaguaUCAUCGACCUGCGg -3'
miRNA:   3'- uCGAUGGU----------CCCGg---AGUGGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 139896 0.66 0.800092
Target:  5'- aGGUgGCCgcGGGGCCUCcgGCCGGCg-GCGc -3'
miRNA:   3'- -UCGaUGG--UCCCGGAG--UGGCUGgaCGU- -5'
15749 5' -60 NC_004065.1 + 124005 0.67 0.75559
Target:  5'- uGGC-GCUAGGGCUgUACCGGCUgugccgGCAa -3'
miRNA:   3'- -UCGaUGGUCCCGGaGUGGCUGGa-----CGU- -5'
15749 5' -60 NC_004065.1 + 191945 0.67 0.746357
Target:  5'- cAGCU-CCA--GCCUCACgGGCCUGUu -3'
miRNA:   3'- -UCGAuGGUccCGGAGUGgCUGGACGu -5'
15749 5' -60 NC_004065.1 + 192917 0.67 0.746357
Target:  5'- gAGCggggGCCGGcucuuugauGGCgCUgACCGAUCUGCGc -3'
miRNA:   3'- -UCGa---UGGUC---------CCG-GAgUGGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 114677 0.67 0.782656
Target:  5'- cGCUAUC-GGGCCgaUCGCCcGCCUcaGCAg -3'
miRNA:   3'- uCGAUGGuCCCGG--AGUGGcUGGA--CGU- -5'
15749 5' -60 NC_004065.1 + 141063 0.67 0.773747
Target:  5'- -aCUACCGGGGCUggcacuaCGCgGGCCUGg- -3'
miRNA:   3'- ucGAUGGUCCCGGa------GUGgCUGGACgu -5'
15749 5' -60 NC_004065.1 + 61440 0.67 0.773747
Target:  5'- -cCUAcCCAGGGCCggcCCGACCcGCu -3'
miRNA:   3'- ucGAU-GGUCCCGGaguGGCUGGaCGu -5'
15749 5' -60 NC_004065.1 + 180781 0.67 0.764723
Target:  5'- uGGCUGCCAcuauGGCCUCACCuACgUaGCu -3'
miRNA:   3'- -UCGAUGGUc---CCGGAGUGGcUGgA-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.