miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15749 5' -60 NC_004065.1 + 155035 1.07 0.002156
Target:  5'- cAGCUACCAGGGCCUCACCGACCUGCAc -3'
miRNA:   3'- -UCGAUGGUCCCGGAGUGGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 166857 0.79 0.195713
Target:  5'- cAGCUcGCCAGGGCCUCGCgGcACUUGUg -3'
miRNA:   3'- -UCGA-UGGUCCCGGAGUGgC-UGGACGu -5'
15749 5' -60 NC_004065.1 + 69406 0.76 0.27743
Target:  5'- cAGCUGCCgacGGGGCgCcaggugcgCGCCGACCUGCu -3'
miRNA:   3'- -UCGAUGG---UCCCG-Ga-------GUGGCUGGACGu -5'
15749 5' -60 NC_004065.1 + 70683 0.73 0.416884
Target:  5'- aGGCUGCCcgAGGGCCUggacguggaCACCaaccGCCUGCGc -3'
miRNA:   3'- -UCGAUGG--UCCCGGA---------GUGGc---UGGACGU- -5'
15749 5' -60 NC_004065.1 + 194268 0.71 0.514838
Target:  5'- cGUUcgaCAGGGCCaCGCCGuCCUGCAa -3'
miRNA:   3'- uCGAug-GUCCCGGaGUGGCuGGACGU- -5'
15749 5' -60 NC_004065.1 + 109194 0.71 0.543206
Target:  5'- cAGCUACUucucgAGGGCCgcguaCGCgGGCCUGUu -3'
miRNA:   3'- -UCGAUGG-----UCCCGGa----GUGgCUGGACGu -5'
15749 5' -60 NC_004065.1 + 44531 0.71 0.556622
Target:  5'- uGUUACCGGGgacgguggcggcgcuGCCUC-CCGACCcGCAc -3'
miRNA:   3'- uCGAUGGUCC---------------CGGAGuGGCUGGaCGU- -5'
15749 5' -60 NC_004065.1 + 208042 0.7 0.581775
Target:  5'- cGGCgugGCCguGGcGGcCCUCACCGuCCUGCc -3'
miRNA:   3'- -UCGa--UGG--UC-CC-GGAGUGGCuGGACGu -5'
15749 5' -60 NC_004065.1 + 110205 0.69 0.617929
Target:  5'- cGCcGCCcgucgagagggaagAGGGCUUCGCCGGCggCUGCGu -3'
miRNA:   3'- uCGaUGG--------------UCCCGGAGUGGCUG--GACGU- -5'
15749 5' -60 NC_004065.1 + 154220 0.69 0.620871
Target:  5'- cGUcgUGCCAGGuGCCUCGCCG-CC-GCu -3'
miRNA:   3'- uCG--AUGGUCC-CGGAGUGGCuGGaCGu -5'
15749 5' -60 NC_004065.1 + 99223 0.69 0.650297
Target:  5'- cAGCgccgGCCAGGcgauccGCCUCGCgaacGCCUGCAg -3'
miRNA:   3'- -UCGa---UGGUCC------CGGAGUGgc--UGGACGU- -5'
15749 5' -60 NC_004065.1 + 122261 0.69 0.650297
Target:  5'- uGCUGCCcGcGCCgaCACCGACCUGgGg -3'
miRNA:   3'- uCGAUGGuCcCGGa-GUGGCUGGACgU- -5'
15749 5' -60 NC_004065.1 + 162061 0.69 0.650297
Target:  5'- -cCUGCgGGGGUUUCACCGGCagcgaCUGCGu -3'
miRNA:   3'- ucGAUGgUCCCGGAGUGGCUG-----GACGU- -5'
15749 5' -60 NC_004065.1 + 187304 0.69 0.660089
Target:  5'- cGCUgcgaucACUGGGGCggaggagcgCUCGCCGACCUcuGCAg -3'
miRNA:   3'- uCGA------UGGUCCCG---------GAGUGGCUGGA--CGU- -5'
15749 5' -60 NC_004065.1 + 110702 0.69 0.668884
Target:  5'- gAGCUGcCCAGGGCgagagccgccaccCUCgACCcgaaGACCUGCu -3'
miRNA:   3'- -UCGAU-GGUCCCG-------------GAG-UGG----CUGGACGu -5'
15749 5' -60 NC_004065.1 + 34930 0.69 0.66986
Target:  5'- cAGCUgacGCCccugGGGGUcugcgccgcgcgCUCGcCCGACCUGCAc -3'
miRNA:   3'- -UCGA---UGG----UCCCG------------GAGU-GGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 79300 0.68 0.688341
Target:  5'- gAGCUgucgacgGCCuGGGCCUCccACCGGCg-GCGg -3'
miRNA:   3'- -UCGA-------UGGuCCCGGAG--UGGCUGgaCGU- -5'
15749 5' -60 NC_004065.1 + 85753 0.68 0.698974
Target:  5'- cAGCgaucgGCCcGGGUCUC-UCGACCUGaCAu -3'
miRNA:   3'- -UCGa----UGGuCCCGGAGuGGCUGGAC-GU- -5'
15749 5' -60 NC_004065.1 + 182733 0.68 0.718138
Target:  5'- gGGCgacGCCGGGGCC--ACCGACaCgucgGCGa -3'
miRNA:   3'- -UCGa--UGGUCCCGGagUGGCUG-Ga---CGU- -5'
15749 5' -60 NC_004065.1 + 111711 0.68 0.727623
Target:  5'- cGGCUGgCAGGGaaggggcaUCGCCGucgccuucGCCUGCGa -3'
miRNA:   3'- -UCGAUgGUCCCgg------AGUGGC--------UGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.