miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15749 5' -60 NC_004065.1 + 180781 0.67 0.764723
Target:  5'- uGGCUGCCAcuauGGCCUCACCuACgUaGCu -3'
miRNA:   3'- -UCGAUGGUc---CCGGAGUGGcUGgA-CGu -5'
15749 5' -60 NC_004065.1 + 29498 0.67 0.75559
Target:  5'- aGGCguuCCAGGuaCUCggugacGCCGGCgCUGCAg -3'
miRNA:   3'- -UCGau-GGUCCcgGAG------UGGCUG-GACGU- -5'
15749 5' -60 NC_004065.1 + 124005 0.67 0.75559
Target:  5'- uGGC-GCUAGGGCUgUACCGGCUgugccgGCAa -3'
miRNA:   3'- -UCGaUGGUCCCGGaGUGGCUGGa-----CGU- -5'
15749 5' -60 NC_004065.1 + 192917 0.67 0.746357
Target:  5'- gAGCggggGCCGGcucuuugauGGCgCUgACCGAUCUGCGc -3'
miRNA:   3'- -UCGa---UGGUC---------CCG-GAgUGGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 191945 0.67 0.746357
Target:  5'- cAGCU-CCA--GCCUCACgGGCCUGUu -3'
miRNA:   3'- -UCGAuGGUccCGGAGUGgCUGGACGu -5'
15749 5' -60 NC_004065.1 + 163010 0.67 0.746357
Target:  5'- uGGCUGCCcgcgcGGGGCCcguacacgggCGCCGACUggucacggcuUGCGc -3'
miRNA:   3'- -UCGAUGG-----UCCCGGa---------GUGGCUGG----------ACGU- -5'
15749 5' -60 NC_004065.1 + 154345 0.67 0.745428
Target:  5'- gGGCgcgGCCAagaaucagcccgcGGccGCCUCGCCGACCUcCAc -3'
miRNA:   3'- -UCGa--UGGU-------------CC--CGGAGUGGCUGGAcGU- -5'
15749 5' -60 NC_004065.1 + 166907 0.67 0.737032
Target:  5'- gGGCUAC--GGGCCgucCACCGGCUgucucgGCAc -3'
miRNA:   3'- -UCGAUGguCCCGGa--GUGGCUGGa-----CGU- -5'
15749 5' -60 NC_004065.1 + 41273 0.68 0.727623
Target:  5'- cGCgaucGCCcugguGGGCUUCGCCGccgugcGCCUGCu -3'
miRNA:   3'- uCGa---UGGu----CCCGGAGUGGC------UGGACGu -5'
15749 5' -60 NC_004065.1 + 151352 0.68 0.727623
Target:  5'- cGCUcUCGGGcGCCgcggCGCCGGCCgcUGCGc -3'
miRNA:   3'- uCGAuGGUCC-CGGa---GUGGCUGG--ACGU- -5'
15749 5' -60 NC_004065.1 + 111711 0.68 0.727623
Target:  5'- cGGCUGgCAGGGaaggggcaUCGCCGucgccuucGCCUGCGa -3'
miRNA:   3'- -UCGAUgGUCCCgg------AGUGGC--------UGGACGU- -5'
15749 5' -60 NC_004065.1 + 182733 0.68 0.718138
Target:  5'- gGGCgacGCCGGGGCC--ACCGACaCgucgGCGa -3'
miRNA:   3'- -UCGa--UGGUCCCGGagUGGCUG-Ga---CGU- -5'
15749 5' -60 NC_004065.1 + 85753 0.68 0.698974
Target:  5'- cAGCgaucgGCCcGGGUCUC-UCGACCUGaCAu -3'
miRNA:   3'- -UCGa----UGGuCCCGGAGuGGCUGGAC-GU- -5'
15749 5' -60 NC_004065.1 + 79300 0.68 0.688341
Target:  5'- gAGCUgucgacgGCCuGGGCCUCccACCGGCg-GCGg -3'
miRNA:   3'- -UCGA-------UGGuCCCGGAG--UGGCUGgaCGU- -5'
15749 5' -60 NC_004065.1 + 34930 0.69 0.66986
Target:  5'- cAGCUgacGCCccugGGGGUcugcgccgcgcgCUCGcCCGACCUGCAc -3'
miRNA:   3'- -UCGA---UGG----UCCCG------------GAGU-GGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 110702 0.69 0.668884
Target:  5'- gAGCUGcCCAGGGCgagagccgccaccCUCgACCcgaaGACCUGCu -3'
miRNA:   3'- -UCGAU-GGUCCCG-------------GAG-UGG----CUGGACGu -5'
15749 5' -60 NC_004065.1 + 187304 0.69 0.660089
Target:  5'- cGCUgcgaucACUGGGGCggaggagcgCUCGCCGACCUcuGCAg -3'
miRNA:   3'- uCGA------UGGUCCCG---------GAGUGGCUGGA--CGU- -5'
15749 5' -60 NC_004065.1 + 122261 0.69 0.650297
Target:  5'- uGCUGCCcGcGCCgaCACCGACCUGgGg -3'
miRNA:   3'- uCGAUGGuCcCGGa-GUGGCUGGACgU- -5'
15749 5' -60 NC_004065.1 + 99223 0.69 0.650297
Target:  5'- cAGCgccgGCCAGGcgauccGCCUCGCgaacGCCUGCAg -3'
miRNA:   3'- -UCGa---UGGUCC------CGGAGUGgc--UGGACGU- -5'
15749 5' -60 NC_004065.1 + 162061 0.69 0.650297
Target:  5'- -cCUGCgGGGGUUUCACCGGCagcgaCUGCGu -3'
miRNA:   3'- ucGAUGgUCCCGGAGUGGCUG-----GACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.