miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15749 5' -60 NC_004065.1 + 29498 0.67 0.75559
Target:  5'- aGGCguuCCAGGuaCUCggugacGCCGGCgCUGCAg -3'
miRNA:   3'- -UCGau-GGUCCcgGAG------UGGCUG-GACGU- -5'
15749 5' -60 NC_004065.1 + 34930 0.69 0.66986
Target:  5'- cAGCUgacGCCccugGGGGUcugcgccgcgcgCUCGcCCGACCUGCAc -3'
miRNA:   3'- -UCGA---UGG----UCCCG------------GAGU-GGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 41273 0.68 0.727623
Target:  5'- cGCgaucGCCcugguGGGCUUCGCCGccgugcGCCUGCu -3'
miRNA:   3'- uCGa---UGGu----CCCGGAGUGGC------UGGACGu -5'
15749 5' -60 NC_004065.1 + 44531 0.71 0.556622
Target:  5'- uGUUACCGGGgacgguggcggcgcuGCCUC-CCGACCcGCAc -3'
miRNA:   3'- uCGAUGGUCC---------------CGGAGuGGCUGGaCGU- -5'
15749 5' -60 NC_004065.1 + 57694 0.66 0.81697
Target:  5'- aGGUg---AGGGCCgCGCUGAUCUGCAc -3'
miRNA:   3'- -UCGauggUCCCGGaGUGGCUGGACGU- -5'
15749 5' -60 NC_004065.1 + 61440 0.67 0.773747
Target:  5'- -cCUAcCCAGGGCCggcCCGACCcGCu -3'
miRNA:   3'- ucGAU-GGUCCCGGaguGGCUGGaCGu -5'
15749 5' -60 NC_004065.1 + 69406 0.76 0.27743
Target:  5'- cAGCUGCCgacGGGGCgCcaggugcgCGCCGACCUGCu -3'
miRNA:   3'- -UCGAUGG---UCCCG-Ga-------GUGGCUGGACGu -5'
15749 5' -60 NC_004065.1 + 70683 0.73 0.416884
Target:  5'- aGGCUGCCcgAGGGCCUggacguggaCACCaaccGCCUGCGc -3'
miRNA:   3'- -UCGAUGG--UCCCGGA---------GUGGc---UGGACGU- -5'
15749 5' -60 NC_004065.1 + 79300 0.68 0.688341
Target:  5'- gAGCUgucgacgGCCuGGGCCUCccACCGGCg-GCGg -3'
miRNA:   3'- -UCGA-------UGGuCCCGGAG--UGGCUGgaCGU- -5'
15749 5' -60 NC_004065.1 + 80377 0.66 0.808605
Target:  5'- cGCUGCggcgcgugCAGGGCCU-GCCGACg-GCGc -3'
miRNA:   3'- uCGAUG--------GUCCCGGAgUGGCUGgaCGU- -5'
15749 5' -60 NC_004065.1 + 85753 0.68 0.698974
Target:  5'- cAGCgaucgGCCcGGGUCUC-UCGACCUGaCAu -3'
miRNA:   3'- -UCGa----UGGuCCCGGAGuGGCUGGAC-GU- -5'
15749 5' -60 NC_004065.1 + 99223 0.69 0.650297
Target:  5'- cAGCgccgGCCAGGcgauccGCCUCGCgaacGCCUGCAg -3'
miRNA:   3'- -UCGa---UGGUCC------CGGAGUGgc--UGGACGU- -5'
15749 5' -60 NC_004065.1 + 101286 0.66 0.800092
Target:  5'- cGCUGCCGacGGcuGCCUCGgCGGCCaGCc -3'
miRNA:   3'- uCGAUGGU--CC--CGGAGUgGCUGGaCGu -5'
15749 5' -60 NC_004065.1 + 109194 0.71 0.543206
Target:  5'- cAGCUACUucucgAGGGCCgcguaCGCgGGCCUGUu -3'
miRNA:   3'- -UCGAUGG-----UCCCGGa----GUGgCUGGACGu -5'
15749 5' -60 NC_004065.1 + 110205 0.69 0.617929
Target:  5'- cGCcGCCcgucgagagggaagAGGGCUUCGCCGGCggCUGCGu -3'
miRNA:   3'- uCGaUGG--------------UCCCGGAGUGGCUG--GACGU- -5'
15749 5' -60 NC_004065.1 + 110702 0.69 0.668884
Target:  5'- gAGCUGcCCAGGGCgagagccgccaccCUCgACCcgaaGACCUGCu -3'
miRNA:   3'- -UCGAU-GGUCCCG-------------GAG-UGG----CUGGACGu -5'
15749 5' -60 NC_004065.1 + 111711 0.68 0.727623
Target:  5'- cGGCUGgCAGGGaaggggcaUCGCCGucgccuucGCCUGCGa -3'
miRNA:   3'- -UCGAUgGUCCCgg------AGUGGC--------UGGACGU- -5'
15749 5' -60 NC_004065.1 + 114677 0.67 0.782656
Target:  5'- cGCUAUC-GGGCCgaUCGCCcGCCUcaGCAg -3'
miRNA:   3'- uCGAUGGuCCCGG--AGUGGcUGGA--CGU- -5'
15749 5' -60 NC_004065.1 + 122261 0.69 0.650297
Target:  5'- uGCUGCCcGcGCCgaCACCGACCUGgGg -3'
miRNA:   3'- uCGAUGGuCcCGGa-GUGGCUGGACgU- -5'
15749 5' -60 NC_004065.1 + 124005 0.67 0.75559
Target:  5'- uGGC-GCUAGGGCUgUACCGGCUgugccgGCAa -3'
miRNA:   3'- -UCGaUGGUCCCGGaGUGGCUGGa-----CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.