miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15749 5' -60 NC_004065.1 + 166857 0.79 0.195713
Target:  5'- cAGCUcGCCAGGGCCUCGCgGcACUUGUg -3'
miRNA:   3'- -UCGA-UGGUCCCGGAGUGgC-UGGACGu -5'
15749 5' -60 NC_004065.1 + 149231 0.66 0.833231
Target:  5'- cGCUGCCGccGCCgccgcCGCCGucGCCUGCu -3'
miRNA:   3'- uCGAUGGUccCGGa----GUGGC--UGGACGu -5'
15749 5' -60 NC_004065.1 + 124480 0.66 0.833231
Target:  5'- cGCUGcgccggguCCAGGGCCgCGCgGAUCUccaGCAu -3'
miRNA:   3'- uCGAU--------GGUCCCGGaGUGgCUGGA---CGU- -5'
15749 5' -60 NC_004065.1 + 142942 0.66 0.825181
Target:  5'- cGGC-ACCAGGGCCagcUGCCcACCUcGCGc -3'
miRNA:   3'- -UCGaUGGUCCCGGa--GUGGcUGGA-CGU- -5'
15749 5' -60 NC_004065.1 + 114677 0.67 0.782656
Target:  5'- cGCUAUC-GGGCCgaUCGCCcGCCUcaGCAg -3'
miRNA:   3'- uCGAUGGuCCCGG--AGUGGcUGGA--CGU- -5'
15749 5' -60 NC_004065.1 + 141063 0.67 0.773747
Target:  5'- -aCUACCGGGGCUggcacuaCGCgGGCCUGg- -3'
miRNA:   3'- ucGAUGGUCCCGGa------GUGgCUGGACgu -5'
15749 5' -60 NC_004065.1 + 61440 0.67 0.773747
Target:  5'- -cCUAcCCAGGGCCggcCCGACCcGCu -3'
miRNA:   3'- ucGAU-GGUCCCGGaguGGCUGGaCGu -5'
15749 5' -60 NC_004065.1 + 180781 0.67 0.764723
Target:  5'- uGGCUGCCAcuauGGCCUCACCuACgUaGCu -3'
miRNA:   3'- -UCGAUGGUc---CCGGAGUGGcUGgA-CGu -5'
15749 5' -60 NC_004065.1 + 29498 0.67 0.75559
Target:  5'- aGGCguuCCAGGuaCUCggugacGCCGGCgCUGCAg -3'
miRNA:   3'- -UCGau-GGUCCcgGAG------UGGCUG-GACGU- -5'
15749 5' -60 NC_004065.1 + 111711 0.68 0.727623
Target:  5'- cGGCUGgCAGGGaaggggcaUCGCCGucgccuucGCCUGCGa -3'
miRNA:   3'- -UCGAUgGUCCCgg------AGUGGC--------UGGACGU- -5'
15749 5' -60 NC_004065.1 + 85753 0.68 0.698974
Target:  5'- cAGCgaucgGCCcGGGUCUC-UCGACCUGaCAu -3'
miRNA:   3'- -UCGa----UGGuCCCGGAGuGGCUGGAC-GU- -5'
15749 5' -60 NC_004065.1 + 69406 0.76 0.27743
Target:  5'- cAGCUGCCgacGGGGCgCcaggugcgCGCCGACCUGCu -3'
miRNA:   3'- -UCGAUGG---UCCCG-Ga-------GUGGCUGGACGu -5'
15749 5' -60 NC_004065.1 + 70683 0.73 0.416884
Target:  5'- aGGCUGCCcgAGGGCCUggacguggaCACCaaccGCCUGCGc -3'
miRNA:   3'- -UCGAUGG--UCCCGGA---------GUGGc---UGGACGU- -5'
15749 5' -60 NC_004065.1 + 194268 0.71 0.514838
Target:  5'- cGUUcgaCAGGGCCaCGCCGuCCUGCAa -3'
miRNA:   3'- uCGAug-GUCCCGGaGUGGCuGGACGU- -5'
15749 5' -60 NC_004065.1 + 44531 0.71 0.556622
Target:  5'- uGUUACCGGGgacgguggcggcgcuGCCUC-CCGACCcGCAc -3'
miRNA:   3'- uCGAUGGUCC---------------CGGAGuGGCUGGaCGU- -5'
15749 5' -60 NC_004065.1 + 110205 0.69 0.617929
Target:  5'- cGCcGCCcgucgagagggaagAGGGCUUCGCCGGCggCUGCGu -3'
miRNA:   3'- uCGaUGG--------------UCCCGGAGUGGCUG--GACGU- -5'
15749 5' -60 NC_004065.1 + 122261 0.69 0.650297
Target:  5'- uGCUGCCcGcGCCgaCACCGACCUGgGg -3'
miRNA:   3'- uCGAUGGuCcCGGa-GUGGCUGGACgU- -5'
15749 5' -60 NC_004065.1 + 99223 0.69 0.650297
Target:  5'- cAGCgccgGCCAGGcgauccGCCUCGCgaacGCCUGCAg -3'
miRNA:   3'- -UCGa---UGGUCC------CGGAGUGgc--UGGACGU- -5'
15749 5' -60 NC_004065.1 + 205507 0.66 0.833231
Target:  5'- cGCUGCCgccgccaucuuGGGGCCggCGCUcagGGCCgGCGg -3'
miRNA:   3'- uCGAUGG-----------UCCCGGa-GUGG---CUGGaCGU- -5'
15749 5' -60 NC_004065.1 + 109194 0.71 0.543206
Target:  5'- cAGCUACUucucgAGGGCCgcguaCGCgGGCCUGUu -3'
miRNA:   3'- -UCGAUGG-----UCCCGGa----GUGgCUGGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.