miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1575 3' -55.6 NC_001347.2 + 165855 0.66 0.976924
Target:  5'- -aUGGCGAGG---CCGGCGGCagGGAc -3'
miRNA:   3'- ccGCUGCUCCuaaGGCUGUCGagCCU- -5'
1575 3' -55.6 NC_001347.2 + 144221 0.66 0.976924
Target:  5'- aGGaCGugGAGGAcaucUUCGu--GCUCGGGg -3'
miRNA:   3'- -CC-GCugCUCCUa---AGGCuguCGAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 36436 0.66 0.976454
Target:  5'- cGGCGGCGcGGuccgucgagaCCGGCGGacgCGGAg -3'
miRNA:   3'- -CCGCUGCuCCuaa-------GGCUGUCga-GCCU- -5'
1575 3' -55.6 NC_001347.2 + 38566 0.66 0.974505
Target:  5'- aGCGACGcGGGGUgcggcgCCGACgcgaacGGCUCGu- -3'
miRNA:   3'- cCGCUGC-UCCUAa-----GGCUG------UCGAGCcu -5'
1575 3' -55.6 NC_001347.2 + 140657 0.66 0.974505
Target:  5'- gGGUGGUGGGGAUUCCGGgGGaaugaUgGGGc -3'
miRNA:   3'- -CCGCUGCUCCUAAGGCUgUCg----AgCCU- -5'
1575 3' -55.6 NC_001347.2 + 142988 0.66 0.974505
Target:  5'- aGGCG--GAGGAg-CCGGCGGCggCGGu -3'
miRNA:   3'- -CCGCugCUCCUaaGGCUGUCGa-GCCu -5'
1575 3' -55.6 NC_001347.2 + 208031 0.66 0.971907
Target:  5'- gGGCGAUG-GGA--CCGACG--UCGGAg -3'
miRNA:   3'- -CCGCUGCuCCUaaGGCUGUcgAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 189240 0.66 0.971907
Target:  5'- aGCGAgGAGGAagaCGACGacucCUCGGAc -3'
miRNA:   3'- cCGCUgCUCCUaagGCUGUc---GAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 142554 0.66 0.969124
Target:  5'- cGGCGAagaCGAGG---CUGGCGGCgucggCGGGa -3'
miRNA:   3'- -CCGCU---GCUCCuaaGGCUGUCGa----GCCU- -5'
1575 3' -55.6 NC_001347.2 + 174850 0.66 0.96615
Target:  5'- aGCG-CGAGGGUUCCaucuuCAGCUgGcGAg -3'
miRNA:   3'- cCGCuGCUCCUAAGGcu---GUCGAgC-CU- -5'
1575 3' -55.6 NC_001347.2 + 1571 0.66 0.96615
Target:  5'- cGCgGACGAGuGGUUUCGGCacGGCgCGGGc -3'
miRNA:   3'- cCG-CUGCUC-CUAAGGCUG--UCGaGCCU- -5'
1575 3' -55.6 NC_001347.2 + 787 0.66 0.962979
Target:  5'- gGGCGACGaAGGcgUCCGcgugucuaaaccGCGuGCUCGc- -3'
miRNA:   3'- -CCGCUGC-UCCuaAGGC------------UGU-CGAGCcu -5'
1575 3' -55.6 NC_001347.2 + 42898 0.66 0.962979
Target:  5'- cGGCGACggaGAGGAgcugUCCG-CcGC-CGGGa -3'
miRNA:   3'- -CCGCUG---CUCCUa---AGGCuGuCGaGCCU- -5'
1575 3' -55.6 NC_001347.2 + 106740 0.66 0.962979
Target:  5'- uGCGuggucucuaACGAGGAUUCUGACGuGCgccCGGc -3'
miRNA:   3'- cCGC---------UGCUCCUAAGGCUGU-CGa--GCCu -5'
1575 3' -55.6 NC_001347.2 + 40730 0.67 0.959606
Target:  5'- uGGgGACGGGGAcagUuuG-CGGCgCGGAc -3'
miRNA:   3'- -CCgCUGCUCCUa--AggCuGUCGaGCCU- -5'
1575 3' -55.6 NC_001347.2 + 165073 0.67 0.959606
Target:  5'- gGGuCGACGAuGGggUCgGGCAGCggagguaaGGAa -3'
miRNA:   3'- -CC-GCUGCU-CCuaAGgCUGUCGag------CCU- -5'
1575 3' -55.6 NC_001347.2 + 40672 0.67 0.956029
Target:  5'- cGGgGACGGGGGUUgCGcuGgGGC-CGGGg -3'
miRNA:   3'- -CCgCUGCUCCUAAgGC--UgUCGaGCCU- -5'
1575 3' -55.6 NC_001347.2 + 109392 0.67 0.944025
Target:  5'- gGGCGACGAcGAcgUCUGGacCAGCggaUCGGAc -3'
miRNA:   3'- -CCGCUGCUcCUa-AGGCU--GUCG---AGCCU- -5'
1575 3' -55.6 NC_001347.2 + 173699 0.67 0.94139
Target:  5'- uGGCGGCGGuGGUUCCGguacgcggaaaaugaGCAGCgguggCGGc -3'
miRNA:   3'- -CCGCUGCUcCUAAGGC---------------UGUCGa----GCCu -5'
1575 3' -55.6 NC_001347.2 + 40098 0.68 0.934936
Target:  5'- cGGgGGCGAGGGa--CGACGGCccUGGGg -3'
miRNA:   3'- -CCgCUGCUCCUaagGCUGUCGa-GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.