miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1575 3' -55.6 NC_001347.2 + 203797 0.68 0.93006
Target:  5'- aGGCGACGGcGGAgga-GACGGCg-GGAa -3'
miRNA:   3'- -CCGCUGCU-CCUaaggCUGUCGagCCU- -5'
1575 3' -55.6 NC_001347.2 + 109613 0.68 0.93006
Target:  5'- -cCGACGAGGAUUCCGACAa------ -3'
miRNA:   3'- ccGCUGCUCCUAAGGCUGUcgagccu -5'
1575 3' -55.6 NC_001347.2 + 78362 0.69 0.908341
Target:  5'- cGGCGugGuGGGacCCGGCGGCgccguggUGGGa -3'
miRNA:   3'- -CCGCugCuCCUaaGGCUGUCGa------GCCU- -5'
1575 3' -55.6 NC_001347.2 + 118716 0.69 0.908341
Target:  5'- cGGCGACGGuacUUuuG-CAGCUCGGGu -3'
miRNA:   3'- -CCGCUGCUccuAAggCuGUCGAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 210 0.69 0.902362
Target:  5'- uGGUGGCGGGGugugUCGGCGGUgugcgcggccUCGGGg -3'
miRNA:   3'- -CCGCUGCUCCuaa-GGCUGUCG----------AGCCU- -5'
1575 3' -55.6 NC_001347.2 + 229689 0.69 0.902362
Target:  5'- uGGUGGCGGGGugugUCGGCGGUgugcgcggccUCGGGg -3'
miRNA:   3'- -CCGCUGCUCCuaa-GGCUGUCG----------AGCCU- -5'
1575 3' -55.6 NC_001347.2 + 13764 0.69 0.896166
Target:  5'- uGGCGACGgacgucGGGA--CCGACGGacgcgaCUCGGGg -3'
miRNA:   3'- -CCGCUGC------UCCUaaGGCUGUC------GAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 36375 0.7 0.86928
Target:  5'- gGGCGGCaGGGGcAUgcggCCuuaGCGGCUCGGGc -3'
miRNA:   3'- -CCGCUG-CUCC-UAa---GGc--UGUCGAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 150459 0.7 0.862053
Target:  5'- cGGCGACGcGGGUUCUguGGCGGCUauGu -3'
miRNA:   3'- -CCGCUGCuCCUAAGG--CUGUCGAgcCu -5'
1575 3' -55.6 NC_001347.2 + 63064 0.71 0.822326
Target:  5'- gGGUGGCgGAGGAcugCCGGCgggugugGGCUCGGc -3'
miRNA:   3'- -CCGCUG-CUCCUaa-GGCUG-------UCGAGCCu -5'
1575 3' -55.6 NC_001347.2 + 159267 0.71 0.802992
Target:  5'- aGGCGGCGAGGcgaaacuggugCUGGCGGCgcCGGGc -3'
miRNA:   3'- -CCGCUGCUCCuaa--------GGCUGUCGa-GCCU- -5'
1575 3' -55.6 NC_001347.2 + 1695 0.71 0.79782
Target:  5'- cGCGcCGAGGAgg-CGACGgcGCUCGGAc -3'
miRNA:   3'- cCGCuGCUCCUaagGCUGU--CGAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 173834 0.72 0.743628
Target:  5'- cGGCGGCgGAGGAggaggaggCGGCGGUUUGGAu -3'
miRNA:   3'- -CCGCUG-CUCCUaag-----GCUGUCGAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 90540 0.73 0.724752
Target:  5'- cGGCGGCc-GGAgacugcgCCGACAGCUCGa- -3'
miRNA:   3'- -CCGCUGcuCCUaa-----GGCUGUCGAGCcu -5'
1575 3' -55.6 NC_001347.2 + 176009 0.73 0.724752
Target:  5'- cGGaCGACGAGGAgaCC-ACGGUUUGGGa -3'
miRNA:   3'- -CC-GCUGCUCCUaaGGcUGUCGAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 2209 0.75 0.60752
Target:  5'- aGCGAUGGcGGG-UCCGGCGGCgUCGGGg -3'
miRNA:   3'- cCGCUGCU-CCUaAGGCUGUCG-AGCCU- -5'
1575 3' -55.6 NC_001347.2 + 140558 0.75 0.597691
Target:  5'- aGGUGACGAcgGGGUUCCGgGCGGCggugcuggCGGGg -3'
miRNA:   3'- -CCGCUGCU--CCUAAGGC-UGUCGa-------GCCU- -5'
1575 3' -55.6 NC_001347.2 + 1966 0.75 0.57811
Target:  5'- cGGCGACGGGGA---CGGCGGCggGGAc -3'
miRNA:   3'- -CCGCUGCUCCUaagGCUGUCGagCCU- -5'
1575 3' -55.6 NC_001347.2 + 111433 0.77 0.483205
Target:  5'- cGGCGACGAGGAcUCgGACacccaAGC-CGGAc -3'
miRNA:   3'- -CCGCUGCUCCUaAGgCUG-----UCGaGCCU- -5'
1575 3' -55.6 NC_001347.2 + 188687 1.11 0.004504
Target:  5'- gGGCGACGAGGAUUCCGACAGCUCGGAu -3'
miRNA:   3'- -CCGCUGCUCCUAAGGCUGUCGAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.