Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1575 | 3' | -55.6 | NC_001347.2 | + | 111433 | 0.77 | 0.483205 |
Target: 5'- cGGCGACGAGGAcUCgGACacccaAGC-CGGAc -3' miRNA: 3'- -CCGCUGCUCCUaAGgCUG-----UCGaGCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 118716 | 0.69 | 0.908341 |
Target: 5'- cGGCGACGGuacUUuuG-CAGCUCGGGu -3' miRNA: 3'- -CCGCUGCUccuAAggCuGUCGAGCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 140558 | 0.75 | 0.597691 |
Target: 5'- aGGUGACGAcgGGGUUCCGgGCGGCggugcuggCGGGg -3' miRNA: 3'- -CCGCUGCU--CCUAAGGC-UGUCGa-------GCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 140657 | 0.66 | 0.974505 |
Target: 5'- gGGUGGUGGGGAUUCCGGgGGaaugaUgGGGc -3' miRNA: 3'- -CCGCUGCUCCUAAGGCUgUCg----AgCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 142554 | 0.66 | 0.969124 |
Target: 5'- cGGCGAagaCGAGG---CUGGCGGCgucggCGGGa -3' miRNA: 3'- -CCGCU---GCUCCuaaGGCUGUCGa----GCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 142988 | 0.66 | 0.974505 |
Target: 5'- aGGCG--GAGGAg-CCGGCGGCggCGGu -3' miRNA: 3'- -CCGCugCUCCUaaGGCUGUCGa-GCCu -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 144221 | 0.66 | 0.976924 |
Target: 5'- aGGaCGugGAGGAcaucUUCGu--GCUCGGGg -3' miRNA: 3'- -CC-GCugCUCCUa---AGGCuguCGAGCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 150459 | 0.7 | 0.862053 |
Target: 5'- cGGCGACGcGGGUUCUguGGCGGCUauGu -3' miRNA: 3'- -CCGCUGCuCCUAAGG--CUGUCGAgcCu -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 159267 | 0.71 | 0.802992 |
Target: 5'- aGGCGGCGAGGcgaaacuggugCUGGCGGCgcCGGGc -3' miRNA: 3'- -CCGCUGCUCCuaa--------GGCUGUCGa-GCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 165073 | 0.67 | 0.959606 |
Target: 5'- gGGuCGACGAuGGggUCgGGCAGCggagguaaGGAa -3' miRNA: 3'- -CC-GCUGCU-CCuaAGgCUGUCGag------CCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 165855 | 0.66 | 0.976924 |
Target: 5'- -aUGGCGAGG---CCGGCGGCagGGAc -3' miRNA: 3'- ccGCUGCUCCuaaGGCUGUCGagCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 173699 | 0.67 | 0.94139 |
Target: 5'- uGGCGGCGGuGGUUCCGguacgcggaaaaugaGCAGCgguggCGGc -3' miRNA: 3'- -CCGCUGCUcCUAAGGC---------------UGUCGa----GCCu -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 173834 | 0.72 | 0.743628 |
Target: 5'- cGGCGGCgGAGGAggaggaggCGGCGGUUUGGAu -3' miRNA: 3'- -CCGCUG-CUCCUaag-----GCUGUCGAGCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 174850 | 0.66 | 0.96615 |
Target: 5'- aGCG-CGAGGGUUCCaucuuCAGCUgGcGAg -3' miRNA: 3'- cCGCuGCUCCUAAGGcu---GUCGAgC-CU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 176009 | 0.73 | 0.724752 |
Target: 5'- cGGaCGACGAGGAgaCC-ACGGUUUGGGa -3' miRNA: 3'- -CC-GCUGCUCCUaaGGcUGUCGAGCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 188687 | 1.11 | 0.004504 |
Target: 5'- gGGCGACGAGGAUUCCGACAGCUCGGAu -3' miRNA: 3'- -CCGCUGCUCCUAAGGCUGUCGAGCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 189240 | 0.66 | 0.971907 |
Target: 5'- aGCGAgGAGGAagaCGACGacucCUCGGAc -3' miRNA: 3'- cCGCUgCUCCUaagGCUGUc---GAGCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 203797 | 0.68 | 0.93006 |
Target: 5'- aGGCGACGGcGGAgga-GACGGCg-GGAa -3' miRNA: 3'- -CCGCUGCU-CCUaaggCUGUCGagCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 208031 | 0.66 | 0.971907 |
Target: 5'- gGGCGAUG-GGA--CCGACG--UCGGAg -3' miRNA: 3'- -CCGCUGCuCCUaaGGCUGUcgAGCCU- -5' |
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1575 | 3' | -55.6 | NC_001347.2 | + | 229689 | 0.69 | 0.902362 |
Target: 5'- uGGUGGCGGGGugugUCGGCGGUgugcgcggccUCGGGg -3' miRNA: 3'- -CCGCUGCUCCuaa-GGCUGUCG----------AGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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