miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1575 3' -55.6 NC_001347.2 + 109613 0.68 0.93006
Target:  5'- -cCGACGAGGAUUCCGACAa------ -3'
miRNA:   3'- ccGCUGCUCCUAAGGCUGUcgagccu -5'
1575 3' -55.6 NC_001347.2 + 109392 0.67 0.944025
Target:  5'- gGGCGACGAcGAcgUCUGGacCAGCggaUCGGAc -3'
miRNA:   3'- -CCGCUGCUcCUa-AGGCU--GUCG---AGCCU- -5'
1575 3' -55.6 NC_001347.2 + 106740 0.66 0.962979
Target:  5'- uGCGuggucucuaACGAGGAUUCUGACGuGCgccCGGc -3'
miRNA:   3'- cCGC---------UGCUCCUAAGGCUGU-CGa--GCCu -5'
1575 3' -55.6 NC_001347.2 + 90540 0.73 0.724752
Target:  5'- cGGCGGCc-GGAgacugcgCCGACAGCUCGa- -3'
miRNA:   3'- -CCGCUGcuCCUaa-----GGCUGUCGAGCcu -5'
1575 3' -55.6 NC_001347.2 + 78362 0.69 0.908341
Target:  5'- cGGCGugGuGGGacCCGGCGGCgccguggUGGGa -3'
miRNA:   3'- -CCGCugCuCCUaaGGCUGUCGa------GCCU- -5'
1575 3' -55.6 NC_001347.2 + 63064 0.71 0.822326
Target:  5'- gGGUGGCgGAGGAcugCCGGCgggugugGGCUCGGc -3'
miRNA:   3'- -CCGCUG-CUCCUaa-GGCUG-------UCGAGCCu -5'
1575 3' -55.6 NC_001347.2 + 42898 0.66 0.962979
Target:  5'- cGGCGACggaGAGGAgcugUCCG-CcGC-CGGGa -3'
miRNA:   3'- -CCGCUG---CUCCUa---AGGCuGuCGaGCCU- -5'
1575 3' -55.6 NC_001347.2 + 40730 0.67 0.959606
Target:  5'- uGGgGACGGGGAcagUuuG-CGGCgCGGAc -3'
miRNA:   3'- -CCgCUGCUCCUa--AggCuGUCGaGCCU- -5'
1575 3' -55.6 NC_001347.2 + 40672 0.67 0.956029
Target:  5'- cGGgGACGGGGGUUgCGcuGgGGC-CGGGg -3'
miRNA:   3'- -CCgCUGCUCCUAAgGC--UgUCGaGCCU- -5'
1575 3' -55.6 NC_001347.2 + 40098 0.68 0.934936
Target:  5'- cGGgGGCGAGGGa--CGACGGCccUGGGg -3'
miRNA:   3'- -CCgCUGCUCCUaagGCUGUCGa-GCCU- -5'
1575 3' -55.6 NC_001347.2 + 38566 0.66 0.974505
Target:  5'- aGCGACGcGGGGUgcggcgCCGACgcgaacGGCUCGu- -3'
miRNA:   3'- cCGCUGC-UCCUAa-----GGCUG------UCGAGCcu -5'
1575 3' -55.6 NC_001347.2 + 36436 0.66 0.976454
Target:  5'- cGGCGGCGcGGuccgucgagaCCGGCGGacgCGGAg -3'
miRNA:   3'- -CCGCUGCuCCuaa-------GGCUGUCga-GCCU- -5'
1575 3' -55.6 NC_001347.2 + 36375 0.7 0.86928
Target:  5'- gGGCGGCaGGGGcAUgcggCCuuaGCGGCUCGGGc -3'
miRNA:   3'- -CCGCUG-CUCC-UAa---GGc--UGUCGAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 13764 0.69 0.896166
Target:  5'- uGGCGACGgacgucGGGA--CCGACGGacgcgaCUCGGGg -3'
miRNA:   3'- -CCGCUGC------UCCUaaGGCUGUC------GAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 2209 0.75 0.60752
Target:  5'- aGCGAUGGcGGG-UCCGGCGGCgUCGGGg -3'
miRNA:   3'- cCGCUGCU-CCUaAGGCUGUCG-AGCCU- -5'
1575 3' -55.6 NC_001347.2 + 1966 0.75 0.57811
Target:  5'- cGGCGACGGGGA---CGGCGGCggGGAc -3'
miRNA:   3'- -CCGCUGCUCCUaagGCUGUCGagCCU- -5'
1575 3' -55.6 NC_001347.2 + 1695 0.71 0.79782
Target:  5'- cGCGcCGAGGAgg-CGACGgcGCUCGGAc -3'
miRNA:   3'- cCGCuGCUCCUaagGCUGU--CGAGCCU- -5'
1575 3' -55.6 NC_001347.2 + 1571 0.66 0.96615
Target:  5'- cGCgGACGAGuGGUUUCGGCacGGCgCGGGc -3'
miRNA:   3'- cCG-CUGCUC-CUAAGGCUG--UCGaGCCU- -5'
1575 3' -55.6 NC_001347.2 + 787 0.66 0.962979
Target:  5'- gGGCGACGaAGGcgUCCGcgugucuaaaccGCGuGCUCGc- -3'
miRNA:   3'- -CCGCUGC-UCCuaAGGC------------UGU-CGAGCcu -5'
1575 3' -55.6 NC_001347.2 + 210 0.69 0.902362
Target:  5'- uGGUGGCGGGGugugUCGGCGGUgugcgcggccUCGGGg -3'
miRNA:   3'- -CCGCUGCUCCuaa-GGCUGUCG----------AGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.