miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1575 5' -52.6 NC_001347.2 + 201238 0.66 0.995914
Target:  5'- gCUgCCAacGCCGUCAAGG-CCGCcucUUCu -3'
miRNA:   3'- -GGgGGU--UGGCAGUUCUaGGCGca-AAG- -5'
1575 5' -52.6 NC_001347.2 + 164961 0.66 0.99452
Target:  5'- gCCUCCGuguuugcuACCGcUGAGGUCCuugcgGCGUUUCu -3'
miRNA:   3'- -GGGGGU--------UGGCaGUUCUAGG-----CGCAAAG- -5'
1575 5' -52.6 NC_001347.2 + 38266 0.66 0.99369
Target:  5'- gCCCCGACCaccgCGugcgcGUCCGCGUUa- -3'
miRNA:   3'- gGGGGUUGGca--GUuc---UAGGCGCAAag -5'
1575 5' -52.6 NC_001347.2 + 189126 0.67 0.990585
Target:  5'- aCCCCUcggaGGCCGUCGAcuccacGcgCCGCGg--- -3'
miRNA:   3'- -GGGGG----UUGGCAGUU------CuaGGCGCaaag -5'
1575 5' -52.6 NC_001347.2 + 210482 0.67 0.990463
Target:  5'- aUCCCGACCaaagcggcggucgGUCcAGGUCaacgGCGUUUCg -3'
miRNA:   3'- gGGGGUUGG-------------CAGuUCUAGg---CGCAAAG- -5'
1575 5' -52.6 NC_001347.2 + 65627 0.67 0.987921
Target:  5'- aCCCCCGACgagCAGGcUCgCGUGUUUUg -3'
miRNA:   3'- -GGGGGUUGgcaGUUCuAG-GCGCAAAG- -5'
1575 5' -52.6 NC_001347.2 + 7851 0.67 0.986387
Target:  5'- --gCgGACUGUCAGGuAUCCGCGUg-- -3'
miRNA:   3'- gggGgUUGGCAGUUC-UAGGCGCAaag -5'
1575 5' -52.6 NC_001347.2 + 191690 0.68 0.984709
Target:  5'- aCCgUAGuuGUCGcGGUCCGCGUcgCg -3'
miRNA:   3'- gGGgGUUggCAGUuCUAGGCGCAaaG- -5'
1575 5' -52.6 NC_001347.2 + 222404 0.68 0.982877
Target:  5'- aCCaguCGGCCGUgGAGAggcgucgCCGCGUcUCg -3'
miRNA:   3'- gGGg--GUUGGCAgUUCUa------GGCGCAaAG- -5'
1575 5' -52.6 NC_001347.2 + 194905 0.68 0.976386
Target:  5'- gCUCCAcGCCGguagCAAGAUCCGCc---- -3'
miRNA:   3'- gGGGGU-UGGCa---GUUCUAGGCGcaaag -5'
1575 5' -52.6 NC_001347.2 + 192125 0.69 0.973867
Target:  5'- gCCgCCAccGCCGUCGuugccGGUCCcCGUUUCc -3'
miRNA:   3'- -GGgGGU--UGGCAGUu----CUAGGcGCAAAG- -5'
1575 5' -52.6 NC_001347.2 + 196762 0.69 0.973867
Target:  5'- aCCCCGugcaaCGUCGAGAacugUCGCgGUUUCg -3'
miRNA:   3'- gGGGGUug---GCAGUUCUa---GGCG-CAAAG- -5'
1575 5' -52.6 NC_001347.2 + 13023 0.7 0.954559
Target:  5'- aCCgCCGAUgucaGUUggGAUCCGCGgaUCc -3'
miRNA:   3'- -GGgGGUUGg---CAGuuCUAGGCGCaaAG- -5'
1575 5' -52.6 NC_001347.2 + 100486 0.7 0.954559
Target:  5'- gCgCCCGGCgGUCAcGGAUCCGCa---- -3'
miRNA:   3'- -GgGGGUUGgCAGU-UCUAGGCGcaaag -5'
1575 5' -52.6 NC_001347.2 + 27991 0.7 0.946404
Target:  5'- aCCCCCAcccgugucgccGCCGUCAccaccgccGAUCCGuCGagUCa -3'
miRNA:   3'- -GGGGGU-----------UGGCAGUu-------CUAGGC-GCaaAG- -5'
1575 5' -52.6 NC_001347.2 + 136009 0.7 0.946404
Target:  5'- aCCCCCGGCCGaggUCcGGAgcgggCCGCGc--- -3'
miRNA:   3'- -GGGGGUUGGC---AGuUCUa----GGCGCaaag -5'
1575 5' -52.6 NC_001347.2 + 225842 0.7 0.945103
Target:  5'- aCCCCCAgcgccaccaccgcuGCCGUCGcca-CCGCGUUa- -3'
miRNA:   3'- -GGGGGU--------------UGGCAGUucuaGGCGCAAag -5'
1575 5' -52.6 NC_001347.2 + 114104 0.7 0.941987
Target:  5'- aCCCC-GCCGUCccgcGGGUCCGCa---- -3'
miRNA:   3'- gGGGGuUGGCAGu---UCUAGGCGcaaag -5'
1575 5' -52.6 NC_001347.2 + 86631 0.72 0.878196
Target:  5'- uCCCCucagCAACCGUCAcGuUCCGCGUc-- -3'
miRNA:   3'- -GGGG----GUUGGCAGUuCuAGGCGCAaag -5'
1575 5' -52.6 NC_001347.2 + 114718 0.78 0.603215
Target:  5'- aCCCCCGacGCCuUCGAGAUCCaGCGgagUCg -3'
miRNA:   3'- -GGGGGU--UGGcAGUUCUAGG-CGCaa-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.