miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15751 3' -54.6 NC_004065.1 + 207136 0.66 0.981086
Target:  5'- cCG-CGUUGGGAGGcUgCGACAGCaGCGu -3'
miRNA:   3'- -GCaGCAGUCCUUC-AgGUUGUCGcCGU- -5'
15751 3' -54.6 NC_004065.1 + 132521 0.66 0.981086
Target:  5'- -aUCGUCGGGguGaUCCGccgcagaucGCuGCGGCAc -3'
miRNA:   3'- gcAGCAGUCCuuC-AGGU---------UGuCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 204616 0.66 0.980464
Target:  5'- gGUUuUCAGGcuguucggaccgccGAGUuuGGCAGCGGCu -3'
miRNA:   3'- gCAGcAGUCC--------------UUCAggUUGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 195010 0.66 0.978953
Target:  5'- gCGUCGUaCAGGAAGa--AGCGGCcGCGc -3'
miRNA:   3'- -GCAGCA-GUCCUUCaggUUGUCGcCGU- -5'
15751 3' -54.6 NC_004065.1 + 161827 0.66 0.978953
Target:  5'- -----aCAGGuAAGUCUuguACAGCGGCGg -3'
miRNA:   3'- gcagcaGUCC-UUCAGGu--UGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 200860 0.66 0.976647
Target:  5'- gCGUCGaCGGGGGcgCgGGCGGUGGCGa -3'
miRNA:   3'- -GCAGCaGUCCUUcaGgUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 176136 0.66 0.974417
Target:  5'- gCGUCGUCuccuucuucggacagAGGAGcguccGUCUgcugagacgauggcGACGGCGGCGg -3'
miRNA:   3'- -GCAGCAG---------------UCCUU-----CAGG--------------UUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 161865 0.66 0.97416
Target:  5'- aGUaCGUaGGGAGGugcUCCAuCGGCGGCc -3'
miRNA:   3'- gCA-GCAgUCCUUC---AGGUuGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 156282 0.66 0.973378
Target:  5'- -cUCGggaggCGGGAguagcggcggcagcAGUggcgCCAGCAGCGGCGg -3'
miRNA:   3'- gcAGCa----GUCCU--------------UCA----GGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 136808 0.66 0.971487
Target:  5'- -uUCGUCGGcugcGUCCccGACAGUGGCGu -3'
miRNA:   3'- gcAGCAGUCcuu-CAGG--UUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 164361 0.67 0.96862
Target:  5'- uCGggCGUC-GGAucuUCCuGCGGCGGCAg -3'
miRNA:   3'- -GCa-GCAGuCCUuc-AGGuUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 32330 0.67 0.96862
Target:  5'- aCGgCGUCGGacgucGAGUCgAGCGGCGGUc -3'
miRNA:   3'- -GCaGCAGUCc----UUCAGgUUGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 200024 0.67 0.96862
Target:  5'- gGUCGUCAGGGgcaGGUgCCGuuccgcguACAGgGGUu -3'
miRNA:   3'- gCAGCAGUCCU---UCA-GGU--------UGUCgCCGu -5'
15751 3' -54.6 NC_004065.1 + 122006 0.67 0.96862
Target:  5'- uGUCGaaggUCGGGAGGUCgGGaGGgGGCGc -3'
miRNA:   3'- gCAGC----AGUCCUUCAGgUUgUCgCCGU- -5'
15751 3' -54.6 NC_004065.1 + 62077 0.67 0.96862
Target:  5'- -uUCGgauUCAGGGGcgaCGGCAGCGGCAg -3'
miRNA:   3'- gcAGC---AGUCCUUcagGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 224367 0.67 0.965554
Target:  5'- aCGgUGUgCAGGAuGUCCAuguGGCGGCGu -3'
miRNA:   3'- -GCaGCA-GUCCUuCAGGUug-UCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 93789 0.67 0.965554
Target:  5'- cCGUCGUCGGuGGAGgagaccuucCCAGCccCGGCGa -3'
miRNA:   3'- -GCAGCAGUC-CUUCa--------GGUUGucGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 115175 0.67 0.965236
Target:  5'- uCGUCGcCAGGAuggcccuGGaUCCGGCcGUGGCc -3'
miRNA:   3'- -GCAGCaGUCCU-------UC-AGGUUGuCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 90788 0.67 0.955107
Target:  5'- --cCG-CAGGuuGUCCAGCAGauCGGCGu -3'
miRNA:   3'- gcaGCaGUCCuuCAGGUUGUC--GCCGU- -5'
15751 3' -54.6 NC_004065.1 + 18038 0.67 0.955107
Target:  5'- -uUCGUCGGGcugcgcgaggucGAGUCUGAUcucgacgauGGCGGCAg -3'
miRNA:   3'- gcAGCAGUCC------------UUCAGGUUG---------UCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.