miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15751 3' -54.6 NC_004065.1 + 154068 1.09 0.00647
Target:  5'- gCGUCGUCAGGAAGUCCAACAGCGGCAu -3'
miRNA:   3'- -GCAGCAGUCCUUCAGGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 150899 0.85 0.202082
Target:  5'- aGUcCGUCGGGAacaaggGGUCCGACGGCGGCu -3'
miRNA:   3'- gCA-GCAGUCCU------UCAGGUUGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 101525 0.78 0.45294
Target:  5'- uCGUCGUCGGuGGAGgcggcagCAGCAGCGGCGc -3'
miRNA:   3'- -GCAGCAGUC-CUUCag-----GUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 89735 0.78 0.480392
Target:  5'- cCGUCGUCAGGggGUUgucgaccacguaCGAC-GCGGCGu -3'
miRNA:   3'- -GCAGCAGUCCuuCAG------------GUUGuCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 162701 0.77 0.537543
Target:  5'- gCGUaCGUCAGGAAGUCCAGgAuGCccaGGCAc -3'
miRNA:   3'- -GCA-GCAGUCCUUCAGGUUgU-CG---CCGU- -5'
15751 3' -54.6 NC_004065.1 + 29665 0.76 0.557131
Target:  5'- aCGUgGUCAGGAaagAGUCCGGCAGguugcugagccuCGGCGc -3'
miRNA:   3'- -GCAgCAGUCCU---UCAGGUUGUC------------GCCGU- -5'
15751 3' -54.6 NC_004065.1 + 24044 0.76 0.596856
Target:  5'- gGUCGUCGGuGAGGauggUgAGCGGCGGCAg -3'
miRNA:   3'- gCAGCAGUC-CUUCa---GgUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 35969 0.75 0.636976
Target:  5'- uCGUCGUUAcguccgcgccauGGAcauGUUCGACGGCGGCAa -3'
miRNA:   3'- -GCAGCAGU------------CCUu--CAGGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 152652 0.75 0.647016
Target:  5'- aCGcUCGUCAucGGAG-CCAACGGCGGCGa -3'
miRNA:   3'- -GC-AGCAGUc-CUUCaGGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 35606 0.74 0.677034
Target:  5'- uGUCGgugCGGGA--UCCAcgGCGGCGGCGg -3'
miRNA:   3'- gCAGCa--GUCCUucAGGU--UGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 182010 0.74 0.68698
Target:  5'- aCGUCGUCAGGGAccCCGACAGCuccuucuGCAu -3'
miRNA:   3'- -GCAGCAGUCCUUcaGGUUGUCGc------CGU- -5'
15751 3' -54.6 NC_004065.1 + 130529 0.74 0.696883
Target:  5'- gCG-CGcCAGGGAccCCAACGGCGGCAu -3'
miRNA:   3'- -GCaGCaGUCCUUcaGGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 180339 0.73 0.726242
Target:  5'- cCGUCaUCAGGAGGgacgCCugcucCGGCGGCAc -3'
miRNA:   3'- -GCAGcAGUCCUUCa---GGuu---GUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 5732 0.73 0.726242
Target:  5'- gGUCGUCGGGAAGaUCgCAGCcuCGGUAu -3'
miRNA:   3'- gCAGCAGUCCUUC-AG-GUUGucGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 178128 0.73 0.735883
Target:  5'- aG-CGUCAGGAAG-CCGGCgauGGCGGUg -3'
miRNA:   3'- gCaGCAGUCCUUCaGGUUG---UCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 224594 0.72 0.764253
Target:  5'- uCGcCGUCGGGGAGUuguucCCAACGcacGCGGCc -3'
miRNA:   3'- -GCaGCAGUCCUUCA-----GGUUGU---CGCCGu -5'
15751 3' -54.6 NC_004065.1 + 67656 0.72 0.764253
Target:  5'- gCGUCGgugaugUCGGGGAGcggCGGCGGCGGCGg -3'
miRNA:   3'- -GCAGC------AGUCCUUCag-GUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 20835 0.72 0.772577
Target:  5'- gGUCGUCgAGGAaagcgccGGUCCGcgAGCGGUAg -3'
miRNA:   3'- gCAGCAG-UCCU-------UCAGGUugUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 83383 0.72 0.773495
Target:  5'- -uUCGUCAGGAAGcCCGugA-CGGCGu -3'
miRNA:   3'- gcAGCAGUCCUUCaGGUugUcGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 104367 0.72 0.778983
Target:  5'- -uUCGUCAGGGAGcacauggcacacgCCAcGCGGCGGCu -3'
miRNA:   3'- gcAGCAGUCCUUCa------------GGU-UGUCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.