miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15751 3' -54.6 NC_004065.1 + 160726 0.67 0.955107
Target:  5'- uGUCGUCGGucGGUUgGACaucuaucgaguuGGCGGCGu -3'
miRNA:   3'- gCAGCAGUCcuUCAGgUUG------------UCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 190019 0.67 0.954726
Target:  5'- cCGUC-UCGGGAAGUaauagcgUUGGCGGCGGUg -3'
miRNA:   3'- -GCAGcAGUCCUUCA-------GGUUGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 26349 0.67 0.951194
Target:  5'- uCGUCGUCAucGGcgcuGg-CGACGGCGGCGg -3'
miRNA:   3'- -GCAGCAGU--CCuu--CagGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 164269 0.67 0.951194
Target:  5'- uGUCGaagUCGGGGuaGGUgCu-CAGCGGCAg -3'
miRNA:   3'- gCAGC---AGUCCU--UCAgGuuGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 54762 0.67 0.95079
Target:  5'- cCGUCGUCAuGGAaccuuacGGUCuCGACGGaggauaCGGCGu -3'
miRNA:   3'- -GCAGCAGU-CCU-------UCAG-GUUGUC------GCCGU- -5'
15751 3' -54.6 NC_004065.1 + 62354 0.68 0.947058
Target:  5'- gGUCGUCGGuu--UUCGACGGCGGUg -3'
miRNA:   3'- gCAGCAGUCcuucAGGUUGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 18723 0.68 0.942698
Target:  5'- uGUCGaUCAcaGAGUCCAGCAGCaGUg -3'
miRNA:   3'- gCAGC-AGUccUUCAGGUUGUCGcCGu -5'
15751 3' -54.6 NC_004065.1 + 153615 0.68 0.942698
Target:  5'- gGUCGgcUCGGGcGGcgCCAcucggACGGCGGCGa -3'
miRNA:   3'- gCAGC--AGUCCuUCa-GGU-----UGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 102272 0.68 0.939974
Target:  5'- -cUCGUCGGGGAGUUCAcccucucggacgaggACAGCGuCGa -3'
miRNA:   3'- gcAGCAGUCCUUCAGGU---------------UGUCGCcGU- -5'
15751 3' -54.6 NC_004065.1 + 166133 0.68 0.938111
Target:  5'- aCGUCGgCAGaGAcGUCggcgccggCGGCAGCGGCGc -3'
miRNA:   3'- -GCAGCaGUC-CUuCAG--------GUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 53923 0.68 0.938111
Target:  5'- --cCGUCAGGAua-CCGcuuGCGGCGGCu -3'
miRNA:   3'- gcaGCAGUCCUucaGGU---UGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 165944 0.68 0.92825
Target:  5'- aCGUCGUaCGGGAAacagagucuGcUCCAACGGUGGaCGu -3'
miRNA:   3'- -GCAGCA-GUCCUU---------C-AGGUUGUCGCC-GU- -5'
15751 3' -54.6 NC_004065.1 + 134011 0.68 0.92825
Target:  5'- gCGggggCGguagUGGGAAGUgCGAUGGCGGCGg -3'
miRNA:   3'- -GCa---GCa---GUCCUUCAgGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 223170 0.69 0.925112
Target:  5'- aGUCGUCGGGAucgacgguccuccucGGUCCAggggauACAGaacgggagucguCGGCGg -3'
miRNA:   3'- gCAGCAGUCCU---------------UCAGGU------UGUC------------GCCGU- -5'
15751 3' -54.6 NC_004065.1 + 26008 0.69 0.922974
Target:  5'- aCGUCGcugaccguggccUCGGcGucGUCCAcCAGCGGCu -3'
miRNA:   3'- -GCAGC------------AGUC-CuuCAGGUuGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 136322 0.69 0.917468
Target:  5'- gGUCGUCaauaAGGAgccggugggucAGUUCGgcuGCAGUGGCAu -3'
miRNA:   3'- gCAGCAG----UCCU-----------UCAGGU---UGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 37557 0.69 0.911733
Target:  5'- -aUCGUCGGGGcacccAGUUCGuCGGUGGCGc -3'
miRNA:   3'- gcAGCAGUCCU-----UCAGGUuGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 44550 0.69 0.911733
Target:  5'- uGUCcUCaucuccccgAGGAAGUCCucUAGCGGCGu -3'
miRNA:   3'- gCAGcAG---------UCCUUCAGGuuGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 82829 0.69 0.908183
Target:  5'- -cUCGUCGGGAAG-CCGGagagcagguacuugcCGGUGGCGa -3'
miRNA:   3'- gcAGCAGUCCUUCaGGUU---------------GUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 91638 0.69 0.90577
Target:  5'- gGUCGacggUCAGGucuaUCAACAGCGGCGc -3'
miRNA:   3'- gCAGC----AGUCCuucaGGUUGUCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.