miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15751 3' -54.6 NC_004065.1 + 511 0.69 0.90577
Target:  5'- cCGUUuUCuGGGAGUCUAcuacGCGGUGGCGc -3'
miRNA:   3'- -GCAGcAGuCCUUCAGGU----UGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 5732 0.73 0.726242
Target:  5'- gGUCGUCGGGAAGaUCgCAGCcuCGGUAu -3'
miRNA:   3'- gCAGCAGUCCUUC-AG-GUUGucGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 18038 0.67 0.955107
Target:  5'- -uUCGUCGGGcugcgcgaggucGAGUCUGAUcucgacgauGGCGGCAg -3'
miRNA:   3'- gcAGCAGUCC------------UUCAGGUUG---------UCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 18723 0.68 0.942698
Target:  5'- uGUCGaUCAcaGAGUCCAGCAGCaGUg -3'
miRNA:   3'- gCAGC-AGUccUUCAGGUUGUCGcCGu -5'
15751 3' -54.6 NC_004065.1 + 20835 0.72 0.772577
Target:  5'- gGUCGUCgAGGAaagcgccGGUCCGcgAGCGGUAg -3'
miRNA:   3'- gCAGCAG-UCCU-------UCAGGUugUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 24044 0.76 0.596856
Target:  5'- gGUCGUCGGuGAGGauggUgAGCGGCGGCAg -3'
miRNA:   3'- gCAGCAGUC-CUUCa---GgUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 26008 0.69 0.922974
Target:  5'- aCGUCGcugaccguggccUCGGcGucGUCCAcCAGCGGCu -3'
miRNA:   3'- -GCAGC------------AGUC-CuuCAGGUuGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 26349 0.67 0.951194
Target:  5'- uCGUCGUCAucGGcgcuGg-CGACGGCGGCGg -3'
miRNA:   3'- -GCAGCAGU--CCuu--CagGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 29665 0.76 0.557131
Target:  5'- aCGUgGUCAGGAaagAGUCCGGCAGguugcugagccuCGGCGc -3'
miRNA:   3'- -GCAgCAGUCCU---UCAGGUUGUC------------GCCGU- -5'
15751 3' -54.6 NC_004065.1 + 32330 0.67 0.96862
Target:  5'- aCGgCGUCGGacgucGAGUCgAGCGGCGGUc -3'
miRNA:   3'- -GCaGCAGUCc----UUCAGgUUGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 35606 0.74 0.677034
Target:  5'- uGUCGgugCGGGA--UCCAcgGCGGCGGCGg -3'
miRNA:   3'- gCAGCa--GUCCUucAGGU--UGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 35969 0.75 0.636976
Target:  5'- uCGUCGUUAcguccgcgccauGGAcauGUUCGACGGCGGCAa -3'
miRNA:   3'- -GCAGCAGU------------CCUu--CAGGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 37557 0.69 0.911733
Target:  5'- -aUCGUCGGGGcacccAGUUCGuCGGUGGCGc -3'
miRNA:   3'- gcAGCAGUCCU-----UCAGGUuGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 44550 0.69 0.911733
Target:  5'- uGUCcUCaucuccccgAGGAAGUCCucUAGCGGCGu -3'
miRNA:   3'- gCAGcAG---------UCCUUCAGGuuGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 45096 0.7 0.865359
Target:  5'- aCGUgcaGcUCGGGGuccUCCAGCGGCGGCGa -3'
miRNA:   3'- -GCAg--C-AGUCCUuc-AGGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 53923 0.68 0.938111
Target:  5'- --cCGUCAGGAua-CCGcuuGCGGCGGCu -3'
miRNA:   3'- gcaGCAGUCCUucaGGU---UGUCGCCGu -5'
15751 3' -54.6 NC_004065.1 + 54762 0.67 0.95079
Target:  5'- cCGUCGUCAuGGAaccuuacGGUCuCGACGGaggauaCGGCGu -3'
miRNA:   3'- -GCAGCAGU-CCU-------UCAG-GUUGUC------GCCGU- -5'
15751 3' -54.6 NC_004065.1 + 59888 0.69 0.90577
Target:  5'- -uUCGUCGGGGucaUCAugAGCGGCGu -3'
miRNA:   3'- gcAGCAGUCCUucaGGUugUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 62077 0.67 0.96862
Target:  5'- -uUCGgauUCAGGGGcgaCGGCAGCGGCAg -3'
miRNA:   3'- gcAGC---AGUCCUUcagGUUGUCGCCGU- -5'
15751 3' -54.6 NC_004065.1 + 62354 0.68 0.947058
Target:  5'- gGUCGUCGGuu--UUCGACGGCGGUg -3'
miRNA:   3'- gCAGCAGUCcuucAGGUUGUCGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.