Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15751 | 3' | -54.6 | NC_004065.1 | + | 91638 | 0.69 | 0.90577 |
Target: 5'- gGUCGacggUCAGGucuaUCAACAGCGGCGc -3' miRNA: 3'- gCAGC----AGUCCuucaGGUUGUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 45096 | 0.7 | 0.865359 |
Target: 5'- aCGUgcaGcUCGGGGuccUCCAGCGGCGGCGa -3' miRNA: 3'- -GCAg--C-AGUCCUuc-AGGUUGUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 148601 | 0.7 | 0.865359 |
Target: 5'- ---gGUCAGGAAGgucaccaggugcUCCAgcgucugucuggACAGCGGCAg -3' miRNA: 3'- gcagCAGUCCUUC------------AGGU------------UGUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 152282 | 0.7 | 0.865359 |
Target: 5'- gGUCG--AGGAgcucgcccAGUCCuGCGGCGGCGg -3' miRNA: 3'- gCAGCagUCCU--------UCAGGuUGUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 113413 | 0.7 | 0.872627 |
Target: 5'- aCGUCGUggcCAGGGAG-CUgcgcagAGCGGCGGCc -3' miRNA: 3'- -GCAGCA---GUCCUUCaGG------UUGUCGCCGu -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 191727 | 0.7 | 0.872627 |
Target: 5'- gGUCGUCAGaGAacAGUUCAACA-CGGUg -3' miRNA: 3'- gCAGCAGUC-CU--UCAGGUUGUcGCCGu -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 124810 | 0.7 | 0.886537 |
Target: 5'- cCGaCGUCcgccGGgcGUCCAcgaACAGCGGCu -3' miRNA: 3'- -GCaGCAGu---CCuuCAGGU---UGUCGCCGu -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 109896 | 0.69 | 0.893169 |
Target: 5'- cCG-CGUCGGGggGUCCcGGCucguccgccGCGGCc -3' miRNA: 3'- -GCaGCAGUCCuuCAGG-UUGu--------CGCCGu -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 59888 | 0.69 | 0.90577 |
Target: 5'- -uUCGUCGGGGucaUCAugAGCGGCGu -3' miRNA: 3'- gcAGCAGUCCUucaGGUugUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 197833 | 0.71 | 0.834322 |
Target: 5'- gGUCGUcCAGGuc--CCAGgGGCGGCAg -3' miRNA: 3'- gCAGCA-GUCCuucaGGUUgUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 83383 | 0.72 | 0.773495 |
Target: 5'- -uUCGUCAGGAAGcCCGugA-CGGCGu -3' miRNA: 3'- gcAGCAGUCCUUCaGGUugUcGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 20835 | 0.72 | 0.772577 |
Target: 5'- gGUCGUCgAGGAaagcgccGGUCCGcgAGCGGUAg -3' miRNA: 3'- gCAGCAG-UCCU-------UCAGGUugUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 89735 | 0.78 | 0.480392 |
Target: 5'- cCGUCGUCAGGggGUUgucgaccacguaCGAC-GCGGCGu -3' miRNA: 3'- -GCAGCAGUCCuuCAG------------GUUGuCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 24044 | 0.76 | 0.596856 |
Target: 5'- gGUCGUCGGuGAGGauggUgAGCGGCGGCAg -3' miRNA: 3'- gCAGCAGUC-CUUCa---GgUUGUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 152652 | 0.75 | 0.647016 |
Target: 5'- aCGcUCGUCAucGGAG-CCAACGGCGGCGa -3' miRNA: 3'- -GC-AGCAGUc-CUUCaGGUUGUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 35606 | 0.74 | 0.677034 |
Target: 5'- uGUCGgugCGGGA--UCCAcgGCGGCGGCGg -3' miRNA: 3'- gCAGCa--GUCCUucAGGU--UGUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 130529 | 0.74 | 0.696883 |
Target: 5'- gCG-CGcCAGGGAccCCAACGGCGGCAu -3' miRNA: 3'- -GCaGCaGUCCUUcaGGUUGUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 5732 | 0.73 | 0.726242 |
Target: 5'- gGUCGUCGGGAAGaUCgCAGCcuCGGUAu -3' miRNA: 3'- gCAGCAGUCCUUC-AG-GUUGucGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 67656 | 0.72 | 0.764253 |
Target: 5'- gCGUCGgugaugUCGGGGAGcggCGGCGGCGGCGg -3' miRNA: 3'- -GCAGC------AGUCCUUCag-GUUGUCGCCGU- -5' |
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15751 | 3' | -54.6 | NC_004065.1 | + | 224594 | 0.72 | 0.764253 |
Target: 5'- uCGcCGUCGGGGAGUuguucCCAACGcacGCGGCc -3' miRNA: 3'- -GCaGCAGUCCUUCA-----GGUUGU---CGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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