miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15751 5' -53.8 NC_004065.1 + 26347 0.66 0.990747
Target:  5'- cGUCGUCGUCaUCGG-CgCUGGcGACGGc -3'
miRNA:   3'- -CAGCAGCGGaAGCCuG-GGCUaUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 118321 0.66 0.990747
Target:  5'- cUCGUCGCCagCGGGaCCGccGACGu -3'
miRNA:   3'- cAGCAGCGGaaGCCUgGGCuaUUGCu -5'
15751 5' -53.8 NC_004065.1 + 133448 0.66 0.990747
Target:  5'- -gCGUCGCCacgcgUCGcGGCUCGucggcgGACGAg -3'
miRNA:   3'- caGCAGCGGa----AGC-CUGGGCua----UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 78926 0.66 0.990747
Target:  5'- cGUCGUCGCCgagcUCGGGCgCCa------- -3'
miRNA:   3'- -CAGCAGCGGa---AGCCUG-GGcuauugcu -5'
15751 5' -53.8 NC_004065.1 + 89953 0.66 0.990747
Target:  5'- -gCGUCGCCUcaacggcuuucUgGGAgCCGGaggGACGAc -3'
miRNA:   3'- caGCAGCGGA-----------AgCCUgGGCUa--UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 155121 0.66 0.990747
Target:  5'- -gCGUCGCCUUCcuccgcGCCCGcgAguACGAg -3'
miRNA:   3'- caGCAGCGGAAGcc----UGGGCuaU--UGCU- -5'
15751 5' -53.8 NC_004065.1 + 101610 0.66 0.990388
Target:  5'- -gCGUCGCauaugaaaacggggCGGACCCGGgu-CGAa -3'
miRNA:   3'- caGCAGCGgaa-----------GCCUGGGCUauuGCU- -5'
15751 5' -53.8 NC_004065.1 + 56054 0.66 0.98951
Target:  5'- uUCG-CGCCccaggucgUGGAccacCCCGAUGGCGAu -3'
miRNA:   3'- cAGCaGCGGaa------GCCU----GGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 87947 0.66 0.98951
Target:  5'- cUCGUUcCgUUCGGACCCGccgAACGc -3'
miRNA:   3'- cAGCAGcGgAAGCCUGGGCua-UUGCu -5'
15751 5' -53.8 NC_004065.1 + 7947 0.66 0.98951
Target:  5'- aUCGggaaCGCCUUCGuACCCGAcgGAgGGu -3'
miRNA:   3'- cAGCa---GCGGAAGCcUGGGCUa-UUgCU- -5'
15751 5' -53.8 NC_004065.1 + 114081 0.66 0.988147
Target:  5'- -aCGU-GCCgUCGGACCaggaagaggaUGAUAGCGAc -3'
miRNA:   3'- caGCAgCGGaAGCCUGG----------GCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 33777 0.66 0.988147
Target:  5'- uGUCGccgggacCGCUUUCGG-CCCGAcauGCGGa -3'
miRNA:   3'- -CAGCa------GCGGAAGCCuGGGCUau-UGCU- -5'
15751 5' -53.8 NC_004065.1 + 158054 0.66 0.988147
Target:  5'- -gCGUCGCCUcCGGgcuGCCCGGcuccaccGGCGGc -3'
miRNA:   3'- caGCAGCGGAaGCC---UGGGCUa------UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 124845 0.66 0.988147
Target:  5'- uUCGUCGCUUUCGuGuCaCCGAUccAugGGg -3'
miRNA:   3'- cAGCAGCGGAAGC-CuG-GGCUA--UugCU- -5'
15751 5' -53.8 NC_004065.1 + 32986 0.66 0.988147
Target:  5'- -aCGgagGCCUcgCGGACCaggcCGGUGACGAg -3'
miRNA:   3'- caGCag-CGGAa-GCCUGG----GCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 139662 0.66 0.988003
Target:  5'- cUCGUCGUCUUgGGAUCgcguucaucgcgaCGcgGACGAg -3'
miRNA:   3'- cAGCAGCGGAAgCCUGG-------------GCuaUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 22952 0.66 0.985686
Target:  5'- aUUGUCGCCggcaucgaggCGGAaacccccgagaucgcCCCGAUcGCGAa -3'
miRNA:   3'- cAGCAGCGGaa--------GCCU---------------GGGCUAuUGCU- -5'
15751 5' -53.8 NC_004065.1 + 95771 0.66 0.985014
Target:  5'- cUCGUCGaCgugCGG-CUCGGUGACGGg -3'
miRNA:   3'- cAGCAGCgGaa-GCCuGGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 625 0.66 0.985014
Target:  5'- aGUCGcuucacCGCuCUUCGGAcCCCGggGugGGg -3'
miRNA:   3'- -CAGCa-----GCG-GAAGCCU-GGGCuaUugCU- -5'
15751 5' -53.8 NC_004065.1 + 170498 0.67 0.983228
Target:  5'- uUCGUCuGUCacgUCGGACCCuAUGauACGAa -3'
miRNA:   3'- cAGCAG-CGGa--AGCCUGGGcUAU--UGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.