miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15751 5' -53.8 NC_004065.1 + 154111 1.09 0.008315
Target:  5'- gGUCGUCGCCUUCGGACCCGAUAACGAg -3'
miRNA:   3'- -CAGCAGCGGAAGCCUGGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 77367 0.78 0.560944
Target:  5'- -cCGUCGCCgccgUUGGcUCCGAUGACGAg -3'
miRNA:   3'- caGCAGCGGa---AGCCuGGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 72602 0.75 0.700012
Target:  5'- gGUCGUaCGUgUUCGcGAuCCCGAUGACGGu -3'
miRNA:   3'- -CAGCA-GCGgAAGC-CU-GGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 88079 0.75 0.709795
Target:  5'- cGUCGUCGCCauaucuggauUUCGccGACCCGGagGACGAu -3'
miRNA:   3'- -CAGCAGCGG----------AAGC--CUGGGCUa-UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 188975 0.74 0.738733
Target:  5'- uUCGUCGCCgcgCGG-CCCGAgcucuGCGGc -3'
miRNA:   3'- cAGCAGCGGaa-GCCuGGGCUau---UGCU- -5'
15751 5' -53.8 NC_004065.1 + 104168 0.74 0.738733
Target:  5'- uGUCgGUCGCCgcuUCGGugCCGGauACGAc -3'
miRNA:   3'- -CAG-CAGCGGa--AGCCugGGCUauUGCU- -5'
15751 5' -53.8 NC_004065.1 + 209308 0.74 0.766874
Target:  5'- cGUCGUCGCCgUCGGugCCGu---CGu -3'
miRNA:   3'- -CAGCAGCGGaAGCCugGGCuauuGCu -5'
15751 5' -53.8 NC_004065.1 + 222935 0.72 0.828152
Target:  5'- cGUCGUCuggaaaucacgGCCUUCGGGCagCGcgAACGAc -3'
miRNA:   3'- -CAGCAG-----------CGGAAGCCUGg-GCuaUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 171264 0.72 0.841084
Target:  5'- -aCGUCGCCUcuuuccaaUCGGGCCCGccgucucuaguccUGGCGAu -3'
miRNA:   3'- caGCAGCGGA--------AGCCUGGGCu------------AUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 118121 0.71 0.874181
Target:  5'- cUCGUCGCCgcgCGGACgaGGUuGCGGu -3'
miRNA:   3'- cAGCAGCGGaa-GCCUGggCUAuUGCU- -5'
15751 5' -53.8 NC_004065.1 + 190287 0.71 0.881162
Target:  5'- --aGUCGCCUUCGucggcGAUCCGGUcGCGGc -3'
miRNA:   3'- cagCAGCGGAAGC-----CUGGGCUAuUGCU- -5'
15751 5' -53.8 NC_004065.1 + 179202 0.71 0.881162
Target:  5'- -aCGUUcUCUUCGGGCCCGugGACGAg -3'
miRNA:   3'- caGCAGcGGAAGCCUGGGCuaUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 101440 0.71 0.900822
Target:  5'- gGUCGcCGCCggCGGACCCGuucuccucgucAUGACc- -3'
miRNA:   3'- -CAGCaGCGGaaGCCUGGGC-----------UAUUGcu -5'
15751 5' -53.8 NC_004065.1 + 145308 0.69 0.934119
Target:  5'- -aCGUCGCCgcuUCgGGugCCGA--GCGAc -3'
miRNA:   3'- caGCAGCGGa--AG-CCugGGCUauUGCU- -5'
15751 5' -53.8 NC_004065.1 + 73221 0.69 0.943401
Target:  5'- aUCGU-GCCgaaGGACgCGGUGACGAc -3'
miRNA:   3'- cAGCAgCGGaagCCUGgGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 197119 0.69 0.951786
Target:  5'- uUCGUCGCCUcCGaccCCCGAcagGACGGc -3'
miRNA:   3'- cAGCAGCGGAaGCcu-GGGCUa--UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 213203 0.68 0.955648
Target:  5'- -gCGUCagUUUCGGACCCGAUGAUc- -3'
miRNA:   3'- caGCAGcgGAAGCCUGGGCUAUUGcu -5'
15751 5' -53.8 NC_004065.1 + 195436 0.68 0.955648
Target:  5'- -gCGUCGCCgucgUCGGACagguCCGAgucCGAc -3'
miRNA:   3'- caGCAGCGGa---AGCCUG----GGCUauuGCU- -5'
15751 5' -53.8 NC_004065.1 + 83189 0.68 0.957133
Target:  5'- -aCGUCGCUgagcacgaagggaaaUUCGGGCCCGGgcaGGCa- -3'
miRNA:   3'- caGCAGCGG---------------AAGCCUGGGCUa--UUGcu -5'
15751 5' -53.8 NC_004065.1 + 123780 0.68 0.959295
Target:  5'- --gGUCGCCUgUCGGACCCa--GGCGu -3'
miRNA:   3'- cagCAGCGGA-AGCCUGGGcuaUUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.