miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15751 5' -53.8 NC_004065.1 + 128158 0.67 0.981286
Target:  5'- cGUCGUCGUCUgCGGcggCGAUAGCGc -3'
miRNA:   3'- -CAGCAGCGGAaGCCuggGCUAUUGCu -5'
15751 5' -53.8 NC_004065.1 + 43278 0.67 0.979181
Target:  5'- aGUCGUCGUCgUC-GACCCGcgaccaGACGAc -3'
miRNA:   3'- -CAGCAGCGGaAGcCUGGGCua----UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 166196 0.67 0.976904
Target:  5'- -aCGUCaGCagCUUCGG-CCCGAUGaaGCGGg -3'
miRNA:   3'- caGCAG-CG--GAAGCCuGGGCUAU--UGCU- -5'
15751 5' -53.8 NC_004065.1 + 186703 0.67 0.97445
Target:  5'- -gCGUCcCCgcCGGGCCaGAUGACGAc -3'
miRNA:   3'- caGCAGcGGaaGCCUGGgCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 113604 0.67 0.97445
Target:  5'- cUCGUCGCCcgCGGuCCCGccAAgGGg -3'
miRNA:   3'- cAGCAGCGGaaGCCuGGGCuaUUgCU- -5'
15751 5' -53.8 NC_004065.1 + 98627 0.68 0.971812
Target:  5'- uUCGcCGCCUUCGGugcGCUCGGUcGCu- -3'
miRNA:   3'- cAGCaGCGGAAGCC---UGGGCUAuUGcu -5'
15751 5' -53.8 NC_004065.1 + 83991 0.68 0.968983
Target:  5'- gGUCGUggCGCCUUCGG---CGAUGAUGGa -3'
miRNA:   3'- -CAGCA--GCGGAAGCCuggGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 211468 0.68 0.967191
Target:  5'- aUCG-CaGCCgUUCGGccaugcgagccaggcGCCCGGUGACGAu -3'
miRNA:   3'- cAGCaG-CGG-AAGCC---------------UGGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 175791 0.68 0.96273
Target:  5'- --gGUCGCCgaaUGaGACCuCGGUGGCGAg -3'
miRNA:   3'- cagCAGCGGaa-GC-CUGG-GCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 66640 0.68 0.96273
Target:  5'- aUCGUCGgCUUCGGcgcggugggcGCCCG---GCGAg -3'
miRNA:   3'- cAGCAGCgGAAGCC----------UGGGCuauUGCU- -5'
15751 5' -53.8 NC_004065.1 + 186737 0.68 0.96273
Target:  5'- uGUCGUCGUCUggUCGcGGgUCGAcGACGAc -3'
miRNA:   3'- -CAGCAGCGGA--AGC-CUgGGCUaUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 35464 0.68 0.96273
Target:  5'- aGUCGaCGCgCUgcgCGGugCCcGUGACGAc -3'
miRNA:   3'- -CAGCaGCG-GAa--GCCugGGcUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 226586 0.68 0.959295
Target:  5'- ---aUCGUacgCGGAUCCGAUGACGGg -3'
miRNA:   3'- cagcAGCGgaaGCCUGGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 123780 0.68 0.959295
Target:  5'- --gGUCGCCUgUCGGACCCa--GGCGu -3'
miRNA:   3'- cagCAGCGGA-AGCCUGGGcuaUUGCu -5'
15751 5' -53.8 NC_004065.1 + 83189 0.68 0.957133
Target:  5'- -aCGUCGCUgagcacgaagggaaaUUCGGGCCCGGgcaGGCa- -3'
miRNA:   3'- caGCAGCGG---------------AAGCCUGGGCUa--UUGcu -5'
15751 5' -53.8 NC_004065.1 + 213203 0.68 0.955648
Target:  5'- -gCGUCagUUUCGGACCCGAUGAUc- -3'
miRNA:   3'- caGCAGcgGAAGCCUGGGCUAUUGcu -5'
15751 5' -53.8 NC_004065.1 + 195436 0.68 0.955648
Target:  5'- -gCGUCGCCgucgUCGGACagguCCGAgucCGAc -3'
miRNA:   3'- caGCAGCGGa---AGCCUG----GGCUauuGCU- -5'
15751 5' -53.8 NC_004065.1 + 197119 0.69 0.951786
Target:  5'- uUCGUCGCCUcCGaccCCCGAcagGACGGc -3'
miRNA:   3'- cAGCAGCGGAaGCcu-GGGCUa--UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 73221 0.69 0.943401
Target:  5'- aUCGU-GCCgaaGGACgCGGUGACGAc -3'
miRNA:   3'- cAGCAgCGGaagCCUGgGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 145308 0.69 0.934119
Target:  5'- -aCGUCGCCgcuUCgGGugCCGA--GCGAc -3'
miRNA:   3'- caGCAGCGGa--AG-CCugGGCUauUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.