miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15751 5' -53.8 NC_004065.1 + 625 0.66 0.985014
Target:  5'- aGUCGcuucacCGCuCUUCGGAcCCCGggGugGGg -3'
miRNA:   3'- -CAGCa-----GCG-GAAGCCU-GGGCuaUugCU- -5'
15751 5' -53.8 NC_004065.1 + 7947 0.66 0.98951
Target:  5'- aUCGggaaCGCCUUCGuACCCGAcgGAgGGu -3'
miRNA:   3'- cAGCa---GCGGAAGCcUGGGCUa-UUgCU- -5'
15751 5' -53.8 NC_004065.1 + 22952 0.66 0.985686
Target:  5'- aUUGUCGCCggcaucgaggCGGAaacccccgagaucgcCCCGAUcGCGAa -3'
miRNA:   3'- cAGCAGCGGaa--------GCCU---------------GGGCUAuUGCU- -5'
15751 5' -53.8 NC_004065.1 + 26347 0.66 0.990747
Target:  5'- cGUCGUCGUCaUCGG-CgCUGGcGACGGc -3'
miRNA:   3'- -CAGCAGCGGaAGCCuG-GGCUaUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 32986 0.66 0.988147
Target:  5'- -aCGgagGCCUcgCGGACCaggcCGGUGACGAg -3'
miRNA:   3'- caGCag-CGGAa-GCCUGG----GCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 33777 0.66 0.988147
Target:  5'- uGUCGccgggacCGCUUUCGG-CCCGAcauGCGGa -3'
miRNA:   3'- -CAGCa------GCGGAAGCCuGGGCUau-UGCU- -5'
15751 5' -53.8 NC_004065.1 + 35464 0.68 0.96273
Target:  5'- aGUCGaCGCgCUgcgCGGugCCcGUGACGAc -3'
miRNA:   3'- -CAGCaGCG-GAa--GCCugGGcUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 43278 0.67 0.979181
Target:  5'- aGUCGUCGUCgUC-GACCCGcgaccaGACGAc -3'
miRNA:   3'- -CAGCAGCGGaAGcCUGGGCua----UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 56054 0.66 0.98951
Target:  5'- uUCG-CGCCccaggucgUGGAccacCCCGAUGGCGAu -3'
miRNA:   3'- cAGCaGCGGaa------GCCU----GGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 66640 0.68 0.96273
Target:  5'- aUCGUCGgCUUCGGcgcggugggcGCCCG---GCGAg -3'
miRNA:   3'- cAGCAGCgGAAGCC----------UGGGCuauUGCU- -5'
15751 5' -53.8 NC_004065.1 + 72602 0.75 0.700012
Target:  5'- gGUCGUaCGUgUUCGcGAuCCCGAUGACGGu -3'
miRNA:   3'- -CAGCA-GCGgAAGC-CU-GGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 73221 0.69 0.943401
Target:  5'- aUCGU-GCCgaaGGACgCGGUGACGAc -3'
miRNA:   3'- cAGCAgCGGaagCCUGgGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 77367 0.78 0.560944
Target:  5'- -cCGUCGCCgccgUUGGcUCCGAUGACGAg -3'
miRNA:   3'- caGCAGCGGa---AGCCuGGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 78926 0.66 0.990747
Target:  5'- cGUCGUCGCCgagcUCGGGCgCCa------- -3'
miRNA:   3'- -CAGCAGCGGa---AGCCUG-GGcuauugcu -5'
15751 5' -53.8 NC_004065.1 + 83189 0.68 0.957133
Target:  5'- -aCGUCGCUgagcacgaagggaaaUUCGGGCCCGGgcaGGCa- -3'
miRNA:   3'- caGCAGCGG---------------AAGCCUGGGCUa--UUGcu -5'
15751 5' -53.8 NC_004065.1 + 83991 0.68 0.968983
Target:  5'- gGUCGUggCGCCUUCGG---CGAUGAUGGa -3'
miRNA:   3'- -CAGCA--GCGGAAGCCuggGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 87947 0.66 0.98951
Target:  5'- cUCGUUcCgUUCGGACCCGccgAACGc -3'
miRNA:   3'- cAGCAGcGgAAGCCUGGGCua-UUGCu -5'
15751 5' -53.8 NC_004065.1 + 88079 0.75 0.709795
Target:  5'- cGUCGUCGCCauaucuggauUUCGccGACCCGGagGACGAu -3'
miRNA:   3'- -CAGCAGCGG----------AAGC--CUGGGCUa-UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 89953 0.66 0.990747
Target:  5'- -gCGUCGCCUcaacggcuuucUgGGAgCCGGaggGACGAc -3'
miRNA:   3'- caGCAGCGGA-----------AgCCUgGGCUa--UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 95771 0.66 0.985014
Target:  5'- cUCGUCGaCgugCGG-CUCGGUGACGGg -3'
miRNA:   3'- cAGCAGCgGaa-GCCuGGGCUAUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.