miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15751 5' -53.8 NC_004065.1 + 32986 0.66 0.988147
Target:  5'- -aCGgagGCCUcgCGGACCaggcCGGUGACGAg -3'
miRNA:   3'- caGCag-CGGAa-GCCUGG----GCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 211468 0.68 0.967191
Target:  5'- aUCG-CaGCCgUUCGGccaugcgagccaggcGCCCGGUGACGAu -3'
miRNA:   3'- cAGCaG-CGG-AAGCC---------------UGGGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 98627 0.68 0.971812
Target:  5'- uUCGcCGCCUUCGGugcGCUCGGUcGCu- -3'
miRNA:   3'- cAGCaGCGGAAGCC---UGGGCUAuUGcu -5'
15751 5' -53.8 NC_004065.1 + 113604 0.67 0.97445
Target:  5'- cUCGUCGCCcgCGGuCCCGccAAgGGg -3'
miRNA:   3'- cAGCAGCGGaaGCCuGGGCuaUUgCU- -5'
15751 5' -53.8 NC_004065.1 + 43278 0.67 0.979181
Target:  5'- aGUCGUCGUCgUC-GACCCGcgaccaGACGAc -3'
miRNA:   3'- -CAGCAGCGGaAGcCUGGGCua----UUGCU- -5'
15751 5' -53.8 NC_004065.1 + 170498 0.67 0.983228
Target:  5'- uUCGUCuGUCacgUCGGACCCuAUGauACGAa -3'
miRNA:   3'- cAGCAG-CGGa--AGCCUGGGcUAU--UGCU- -5'
15751 5' -53.8 NC_004065.1 + 625 0.66 0.985014
Target:  5'- aGUCGcuucacCGCuCUUCGGAcCCCGggGugGGg -3'
miRNA:   3'- -CAGCa-----GCG-GAAGCCU-GGGCuaUugCU- -5'
15751 5' -53.8 NC_004065.1 + 22952 0.66 0.985686
Target:  5'- aUUGUCGCCggcaucgaggCGGAaacccccgagaucgcCCCGAUcGCGAa -3'
miRNA:   3'- cAGCAGCGGaa--------GCCU---------------GGGCUAuUGCU- -5'
15751 5' -53.8 NC_004065.1 + 139662 0.66 0.988003
Target:  5'- cUCGUCGUCUUgGGAUCgcguucaucgcgaCGcgGACGAg -3'
miRNA:   3'- cAGCAGCGGAAgCCUGG-------------GCuaUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 175791 0.68 0.96273
Target:  5'- --gGUCGCCgaaUGaGACCuCGGUGGCGAg -3'
miRNA:   3'- cagCAGCGGaa-GC-CUGG-GCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 35464 0.68 0.96273
Target:  5'- aGUCGaCGCgCUgcgCGGugCCcGUGACGAc -3'
miRNA:   3'- -CAGCaGCG-GAa--GCCugGGcUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 123780 0.68 0.959295
Target:  5'- --gGUCGCCUgUCGGACCCa--GGCGu -3'
miRNA:   3'- cagCAGCGGA-AGCCUGGGcuaUUGCu -5'
15751 5' -53.8 NC_004065.1 + 104168 0.74 0.738733
Target:  5'- uGUCgGUCGCCgcuUCGGugCCGGauACGAc -3'
miRNA:   3'- -CAG-CAGCGGa--AGCCugGGCUauUGCU- -5'
15751 5' -53.8 NC_004065.1 + 222935 0.72 0.828152
Target:  5'- cGUCGUCuggaaaucacgGCCUUCGGGCagCGcgAACGAc -3'
miRNA:   3'- -CAGCAG-----------CGGAAGCCUGg-GCuaUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 171264 0.72 0.841084
Target:  5'- -aCGUCGCCUcuuuccaaUCGGGCCCGccgucucuaguccUGGCGAu -3'
miRNA:   3'- caGCAGCGGA--------AGCCUGGGCu------------AUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 118121 0.71 0.874181
Target:  5'- cUCGUCGCCgcgCGGACgaGGUuGCGGu -3'
miRNA:   3'- cAGCAGCGGaa-GCCUGggCUAuUGCU- -5'
15751 5' -53.8 NC_004065.1 + 101440 0.71 0.900822
Target:  5'- gGUCGcCGCCggCGGACCCGuucuccucgucAUGACc- -3'
miRNA:   3'- -CAGCaGCGGaaGCCUGGGC-----------UAUUGcu -5'
15751 5' -53.8 NC_004065.1 + 145308 0.69 0.934119
Target:  5'- -aCGUCGCCgcuUCgGGugCCGA--GCGAc -3'
miRNA:   3'- caGCAGCGGa--AG-CCugGGCUauUGCU- -5'
15751 5' -53.8 NC_004065.1 + 73221 0.69 0.943401
Target:  5'- aUCGU-GCCgaaGGACgCGGUGACGAc -3'
miRNA:   3'- cAGCAgCGGaagCCUGgGCUAUUGCU- -5'
15751 5' -53.8 NC_004065.1 + 195436 0.68 0.955648
Target:  5'- -gCGUCGCCgucgUCGGACagguCCGAgucCGAc -3'
miRNA:   3'- caGCAGCGGa---AGCCUG----GGCUauuGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.