Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
15752 | 3' | -57 | NC_004065.1 | + | 17727 | 0.67 | 0.898676 |
Target: 5'- -uGCGCCUCAGGcGAUCU-GGGAGGc- -3' miRNA: 3'- cuCGCGGAGUUC-CUGGAgUUCUCCca -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 32002 | 0.66 | 0.922122 |
Target: 5'- aGAGCGCCgCAAGGAgcgUCUgGAGAGcaugcccaGGUg -3' miRNA: 3'- -CUCGCGGaGUUCCU---GGAgUUCUC--------CCA- -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 36020 | 0.67 | 0.898676 |
Target: 5'- cGAGCGCgagauuaugUUCAucAGGGCC--GAGAGGGUc -3' miRNA: 3'- -CUCGCG---------GAGU--UCCUGGagUUCUCCCA- -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 37288 | 0.69 | 0.772702 |
Target: 5'- aGAGCGCCaguuUCGGcGGCCUCAAGAGcccccGGUc -3' miRNA: 3'- -CUCGCGG----AGUUcCUGGAGUUCUC-----CCA- -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 57766 | 0.68 | 0.8493 |
Target: 5'- cGAGCGCCagGuGGccGCCUUAcGAGGGg -3' miRNA: 3'- -CUCGCGGagUuCC--UGGAGUuCUCCCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 76714 | 0.71 | 0.656607 |
Target: 5'- aGAGCGCgUCGAGGuugcacuCCUCGGcGGGGa -3' miRNA: 3'- -CUCGCGgAGUUCCu------GGAGUUcUCCCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 78293 | 0.66 | 0.922122 |
Target: 5'- uAGCgGCuCUCGAGGGCCUCGGacugcGuGGGc -3' miRNA: 3'- cUCG-CG-GAGUUCCUGGAGUU-----CuCCCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 80565 | 0.77 | 0.368669 |
Target: 5'- gGAGgGCUUCGGGGucgauaGCCUCGGGGGGGa -3' miRNA: 3'- -CUCgCGGAGUUCC------UGGAGUUCUCCCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 80958 | 0.7 | 0.744719 |
Target: 5'- aGGCaCCUCGGGGGagcCCUCcaccAAGAGGGUg -3' miRNA: 3'- cUCGcGGAGUUCCU---GGAG----UUCUCCCA- -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 92047 | 0.72 | 0.646614 |
Target: 5'- uGGCGCgCUCGAGGcAUCUCAcgcgcgcucGGAGGGc -3' miRNA: 3'- cUCGCG-GAGUUCC-UGGAGU---------UCUCCCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 98221 | 0.67 | 0.885617 |
Target: 5'- cGAGCGaggaCUCGAGGAUC----GAGGGUg -3' miRNA: 3'- -CUCGCg---GAGUUCCUGGaguuCUCCCA- -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 117823 | 0.67 | 0.892255 |
Target: 5'- uAGCGCCgUCGAGGGCgaCAccAGcGGGUu -3' miRNA: 3'- cUCGCGG-AGUUCCUGgaGU--UCuCCCA- -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 127196 | 0.66 | 0.904875 |
Target: 5'- cGGGC-CCUCGGGGACguggUUCGGGAGcGGc -3' miRNA: 3'- -CUCGcGGAGUUCCUG----GAGUUCUC-CCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 130289 | 0.71 | 0.686442 |
Target: 5'- gGAGCGCgagGAGGACgaCGAGAGGGg -3' miRNA: 3'- -CUCGCGgagUUCCUGgaGUUCUCCCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 130882 | 0.71 | 0.656607 |
Target: 5'- cGGGCGCCggcgUGAGGuCCUCAuGAGGuGUg -3' miRNA: 3'- -CUCGCGGa---GUUCCuGGAGUuCUCC-CA- -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 142439 | 0.66 | 0.922122 |
Target: 5'- cGGCuCCUCAGGGuCaugaaggcgaUCGAGAGGGa -3' miRNA: 3'- cUCGcGGAGUUCCuGg---------AGUUCUCCCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 143070 | 0.71 | 0.686442 |
Target: 5'- gGGGCGCUUCGGGGGCgaCGAGcgaaucuacguGGGGUc -3' miRNA: 3'- -CUCGCGGAGUUCCUGgaGUUC-----------UCCCA- -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 143297 | 0.75 | 0.453222 |
Target: 5'- aGGCgGCgUCGGGGGCCggggCAGGAGGGg -3' miRNA: 3'- cUCG-CGgAGUUCCUGGa---GUUCUCCCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 149018 | 0.67 | 0.898044 |
Target: 5'- cGGCGaucggaaCCUCGGGcuGACCUCGGGAGcGGg -3' miRNA: 3'- cUCGC-------GGAGUUC--CUGGAGUUCUC-CCa -5' |
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15752 | 3' | -57 | NC_004065.1 | + | 149084 | 0.71 | 0.686442 |
Target: 5'- aGGUGCCUgaaAAGGACgUCcuGAGGGUa -3' miRNA: 3'- cUCGCGGAg--UUCCUGgAGuuCUCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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