miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15752 5' -48.8 NC_004065.1 + 554 0.66 0.99982
Target:  5'- -gAGCgcccCCUGuucGCG-CAACGggGCUg -3'
miRNA:   3'- aaUUGaa--GGACu--CGCaGUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 103735 0.66 0.99982
Target:  5'- --cGCcUCCUucGGCGUCGguucgcgcgGCGggGCCu -3'
miRNA:   3'- aauUGaAGGAc-UCGCAGU---------UGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 89988 0.66 0.999771
Target:  5'- -cGACgacggGAGCGaaccCGACGGAGCCg -3'
miRNA:   3'- aaUUGaaggaCUCGCa---GUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 146748 0.66 0.999771
Target:  5'- --cACaUCUaugUGGGCGUCGGCGgcGUCu -3'
miRNA:   3'- aauUGaAGG---ACUCGCAGUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 85720 0.66 0.999771
Target:  5'- ---uCUUCUUGAcauucuGCGUCGACG-AGCg -3'
miRNA:   3'- aauuGAAGGACU------CGCAGUUGCuUCGg -5'
15752 5' -48.8 NC_004065.1 + 167884 0.66 0.999765
Target:  5'- -aAGCUgauccccUCCUGuacGCGgCGACGAuGCCg -3'
miRNA:   3'- aaUUGA-------AGGACu--CGCaGUUGCUuCGG- -5'
15752 5' -48.8 NC_004065.1 + 96656 0.66 0.999709
Target:  5'- ---uCUUUCUcGGCGUCGGCGGGcucGCCc -3'
miRNA:   3'- aauuGAAGGAcUCGCAGUUGCUU---CGG- -5'
15752 5' -48.8 NC_004065.1 + 30828 0.66 0.999709
Target:  5'- --uGCgcgUCCUc-GCGacccUCGACGAAGCCg -3'
miRNA:   3'- aauUGa--AGGAcuCGC----AGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 163374 0.66 0.999709
Target:  5'- gUGGCUcUCCaucAGCGUCAGCGcguccGCCa -3'
miRNA:   3'- aAUUGA-AGGac-UCGCAGUUGCuu---CGG- -5'
15752 5' -48.8 NC_004065.1 + 152289 0.66 0.999702
Target:  5'- -gAGCUcgcccagUCCUGcGGCGgCGGCGguGCCg -3'
miRNA:   3'- aaUUGA-------AGGAC-UCGCaGUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 171394 0.66 0.999634
Target:  5'- -------aCUGAGUuUCAGCGAGGCUg -3'
miRNA:   3'- aauugaagGACUCGcAGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 97432 0.66 0.999634
Target:  5'- -cAACcUCUUGAuCGUgGACGAGGCa -3'
miRNA:   3'- aaUUGaAGGACUcGCAgUUGCUUCGg -5'
15752 5' -48.8 NC_004065.1 + 1063 0.66 0.999634
Target:  5'- --cGCUcgaUCUGAGCGUCucgaGAUGAGGCa -3'
miRNA:   3'- aauUGAa--GGACUCGCAG----UUGCUUCGg -5'
15752 5' -48.8 NC_004065.1 + 119875 0.66 0.999634
Target:  5'- -aGACgucCCUGAGCGagaacuugcCGGCGcGGCCg -3'
miRNA:   3'- aaUUGaa-GGACUCGCa--------GUUGCuUCGG- -5'
15752 5' -48.8 NC_004065.1 + 25007 0.66 0.999634
Target:  5'- -gGGCgUCCgUGGGCG-CGGCaaGggGCCg -3'
miRNA:   3'- aaUUGaAGG-ACUCGCaGUUG--CuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 60920 0.66 0.999634
Target:  5'- -aGAUcUUgaGAGCGUCGACGGA-CCa -3'
miRNA:   3'- aaUUGaAGgaCUCGCAGUUGCUUcGG- -5'
15752 5' -48.8 NC_004065.1 + 125303 0.66 0.999634
Target:  5'- -cAGCU-CC-GGGUacuggugguccGUCAGCGAGGCCc -3'
miRNA:   3'- aaUUGAaGGaCUCG-----------CAGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 164370 0.67 0.999542
Target:  5'- -gGAuCUUCCUGcGGCGgCAGCGGcAGCg -3'
miRNA:   3'- aaUU-GAAGGAC-UCGCaGUUGCU-UCGg -5'
15752 5' -48.8 NC_004065.1 + 13082 0.67 0.999542
Target:  5'- -gGACgucgUCCcGGGUGUCGcguccgaggACGAAGUCu -3'
miRNA:   3'- aaUUGa---AGGaCUCGCAGU---------UGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 88604 0.67 0.999542
Target:  5'- -cGGCccUCCaUGAGC-UCGGCGAuGGCCg -3'
miRNA:   3'- aaUUGa-AGG-ACUCGcAGUUGCU-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.