miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15752 5' -48.8 NC_004065.1 + 153977 1.1 0.017719
Target:  5'- uUUAACUUCCUGAGCGUCAACGAAGCCc -3'
miRNA:   3'- -AAUUGAAGGACUCGCAGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 34031 0.77 0.812903
Target:  5'- -cGACUcCCUGgaccaGGCGUCcauGACGAAGCCg -3'
miRNA:   3'- aaUUGAaGGAC-----UCGCAG---UUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 104827 0.77 0.821826
Target:  5'- -cAACUa-CUG-GCGUCAGCGggGCCu -3'
miRNA:   3'- aaUUGAagGACuCGCAGUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 67331 0.77 0.847458
Target:  5'- -gGACUUCCUGAcguacGCGagAGgGAAGCCg -3'
miRNA:   3'- aaUUGAAGGACU-----CGCagUUgCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 181511 0.76 0.863518
Target:  5'- gUGACggCCgUGGGCGUUGACGGAuGCCu -3'
miRNA:   3'- aAUUGaaGG-ACUCGCAGUUGCUU-CGG- -5'
15752 5' -48.8 NC_004065.1 + 112672 0.74 0.934913
Target:  5'- uUUAACUUCCUGAcgGCGgacccCGAC-AAGCCg -3'
miRNA:   3'- -AAUUGAAGGACU--CGCa----GUUGcUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 85669 0.74 0.939896
Target:  5'- -gGACgauaCUGGGCGUCuGCGgcGCCa -3'
miRNA:   3'- aaUUGaag-GACUCGCAGuUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 83417 0.73 0.944626
Target:  5'- cUGACggcgUCCaGGGUGUCGACGGcguuGCCg -3'
miRNA:   3'- aAUUGa---AGGaCUCGCAGUUGCUu---CGG- -5'
15752 5' -48.8 NC_004065.1 + 88912 0.73 0.961077
Target:  5'- ------aCCUGAgcGCGUCGGCGAuGCCg -3'
miRNA:   3'- aauugaaGGACU--CGCAGUUGCUuCGG- -5'
15752 5' -48.8 NC_004065.1 + 107285 0.72 0.964592
Target:  5'- -----aUCCUGGGCGUCccGACGcacGGCCa -3'
miRNA:   3'- aauugaAGGACUCGCAG--UUGCu--UCGG- -5'
15752 5' -48.8 NC_004065.1 + 136003 0.72 0.964592
Target:  5'- ------aCCUGGGCaGggagCAACGAAGCCg -3'
miRNA:   3'- aauugaaGGACUCG-Ca---GUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 211416 0.72 0.96659
Target:  5'- -aAACgugggCCUGGGCGgugacgacaacacCAACGAGGCCc -3'
miRNA:   3'- aaUUGaa---GGACUCGCa------------GUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 206476 0.72 0.97379
Target:  5'- -aGACaUCCUGGGCGUUcgucACGuAGCCc -3'
miRNA:   3'- aaUUGaAGGACUCGCAGu---UGCuUCGG- -5'
15752 5' -48.8 NC_004065.1 + 94563 0.71 0.980901
Target:  5'- gUGACcUCCUGGGCGUacgagauGCGAauggcguugucgcAGCCg -3'
miRNA:   3'- aAUUGaAGGACUCGCAgu-----UGCU-------------UCGG- -5'
15752 5' -48.8 NC_004065.1 + 73950 0.71 0.983181
Target:  5'- cUGGCagCCgagacaGGCGUCGGCGAGGUCg -3'
miRNA:   3'- aAUUGaaGGac----UCGCAGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 97884 0.71 0.98507
Target:  5'- -gGGCgcgaUCCUGAGCGUCuACGuGGaCCc -3'
miRNA:   3'- aaUUGa---AGGACUCGCAGuUGCuUC-GG- -5'
15752 5' -48.8 NC_004065.1 + 146600 0.7 0.988357
Target:  5'- gUGGCcaUCgGGGcCGUCGGCGggGCCg -3'
miRNA:   3'- aAUUGaaGGaCUC-GCAGUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 73358 0.7 0.989775
Target:  5'- --cACUUUCgaGAGCGaCAuguGCGAGGCCa -3'
miRNA:   3'- aauUGAAGGa-CUCGCaGU---UGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 165587 0.7 0.991054
Target:  5'- -cGACagUUCCUcAGCGUCuGCGuGGCCg -3'
miRNA:   3'- aaUUG--AAGGAcUCGCAGuUGCuUCGG- -5'
15752 5' -48.8 NC_004065.1 + 62014 0.7 0.993232
Target:  5'- -gAACcggCCcGAgacGCGUCGACGGAGCUg -3'
miRNA:   3'- aaUUGaa-GGaCU---CGCAGUUGCUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.