miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
15752 5' -48.8 NC_004065.1 + 174115 0.67 0.999542
Target:  5'- -cGAUUgcUCCUuAGCGgggCAGCGggGUCu -3'
miRNA:   3'- aaUUGA--AGGAcUCGCa--GUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 88604 0.67 0.999542
Target:  5'- -cGGCccUCCaUGAGC-UCGGCGAuGGCCg -3'
miRNA:   3'- aaUUGa-AGG-ACUCGcAGUUGCU-UCGG- -5'
15752 5' -48.8 NC_004065.1 + 138308 0.67 0.99943
Target:  5'- -gGACgcggcCCUGAucGCGU--GCGAGGCCu -3'
miRNA:   3'- aaUUGaa---GGACU--CGCAguUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 30517 0.67 0.99943
Target:  5'- ----aUUCCggGGGCGUUccgaaAACGAAGUCg -3'
miRNA:   3'- aauugAAGGa-CUCGCAG-----UUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 41051 0.67 0.99943
Target:  5'- -gAGCUcgggCCgc-GCGgCGACGAAGCCg -3'
miRNA:   3'- aaUUGAa---GGacuCGCaGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 16531 0.67 0.99943
Target:  5'- -cAACUUUCguGGCGUCGACGGucgcGGCg -3'
miRNA:   3'- aaUUGAAGGacUCGCAGUUGCU----UCGg -5'
15752 5' -48.8 NC_004065.1 + 57451 0.67 0.999296
Target:  5'- ---cUUUUCUuAGCGUCGGCG-GGCCg -3'
miRNA:   3'- aauuGAAGGAcUCGCAGUUGCuUCGG- -5'
15752 5' -48.8 NC_004065.1 + 206384 0.67 0.999296
Target:  5'- -gGGCU-CCU--GCGUCGGCccGAGGCCa -3'
miRNA:   3'- aaUUGAaGGAcuCGCAGUUG--CUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 6940 0.67 0.999296
Target:  5'- -cGGCgUCCgccgucgGAagcuGCGUCGACGGAGUCc -3'
miRNA:   3'- aaUUGaAGGa------CU----CGCAGUUGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 136540 0.67 0.999296
Target:  5'- --uGCUggUCCUGGG-GUCcGgGGAGCCg -3'
miRNA:   3'- aauUGA--AGGACUCgCAGuUgCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 186143 0.67 0.999296
Target:  5'- -gAAC--CCUGAGgGUggcCGugGAGGCCg -3'
miRNA:   3'- aaUUGaaGGACUCgCA---GUugCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 229416 0.67 0.999296
Target:  5'- cUGACgagCCUGAGCGcgUAACuGGucuGCCa -3'
miRNA:   3'- aAUUGaa-GGACUCGCa-GUUG-CUu--CGG- -5'
15752 5' -48.8 NC_004065.1 + 28634 0.67 0.999135
Target:  5'- -cGACgcaUCUGuGCGUCGACGuGGCa -3'
miRNA:   3'- aaUUGaa-GGACuCGCAGUUGCuUCGg -5'
15752 5' -48.8 NC_004065.1 + 112643 0.67 0.999135
Target:  5'- --cGCggCC-GAGCGUCGAUauGGCCg -3'
miRNA:   3'- aauUGaaGGaCUCGCAGUUGcuUCGG- -5'
15752 5' -48.8 NC_004065.1 + 127617 0.67 0.999135
Target:  5'- -cGGCUccUCCcGucCGUCGACGAGGCg -3'
miRNA:   3'- aaUUGA--AGGaCucGCAGUUGCUUCGg -5'
15752 5' -48.8 NC_004065.1 + 116140 0.67 0.999135
Target:  5'- -cGGCgUCCUGcGGCGgcu-CGggGCCg -3'
miRNA:   3'- aaUUGaAGGAC-UCGCaguuGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 77183 0.67 0.999135
Target:  5'- --uGCUUCCUGugccacaaguGCG-CGGCGgcGCCc -3'
miRNA:   3'- aauUGAAGGACu---------CGCaGUUGCuuCGG- -5'
15752 5' -48.8 NC_004065.1 + 198987 0.67 0.998944
Target:  5'- -aGAC-UCCUG-GCGcUCGGCaGGGCCg -3'
miRNA:   3'- aaUUGaAGGACuCGC-AGUUGcUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 37637 0.68 0.998717
Target:  5'- -----aUCCcGAGCGaUCAccgugACGAAGCCc -3'
miRNA:   3'- aauugaAGGaCUCGC-AGU-----UGCUUCGG- -5'
15752 5' -48.8 NC_004065.1 + 129810 0.68 0.998717
Target:  5'- -cAACUUCgUGGGCGaCGugGAccucaAGCUg -3'
miRNA:   3'- aaUUGAAGgACUCGCaGUugCU-----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.